Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05882 ATGCTCCTTGCCGGCGCCTTGGTCATAGTAACGTGTTACCGCCTTATCCAAAGGTTCCAACACCAGAGTTTCCTCACTTCCATCTCGTTGAACGATGTGGAGTCCCAGTCCACAATGGTGGAGGCCCCACACGTACATGCTTGTGGCTTGGAAAAGAGTGTTATAAACGCCATTCCCTCGTTCATCTACAATACCACTAAATCTAAACAAGATGAATCTAAGCGTGAGTGCACCATTTGCTTGGTTGAATTTGAAAACAATGATTACATTCGCACGCTCCCTCTTTGTTCCCACACTTTCCATCTCGTTTGCATTGATGCTTGGCTTCATAAAAAACCTAACTGTCCTCTATGTCGCTCATGTCTTCGTTGTGATCAGTTTGATAAGTCCCCTTTCAAACCTATCATGGCGGATAGAATCCACCCCTCCTTTCATGATCATGTGCCTTTCCAAATCTCTCATTCTCACTCTGTAATTCAATCAGTGATGGAAATCACACTCTGCTCCAACAATGACGATGATAATCACGGTGTAGGAGGCGGGGTACCGGTGTTTGGAGCAACAATGCAGGTTCCCTAG 579 0.456 MLLAGALVIVTCYRLIQRFQHQSFLTSISLNDVESQSTMVEAPHVHACGLEKSVINAIPSFIYNTTKSKQDESKRECTICLVEFENNDYIRTLPLCSHTFHLVCIDAWLHKKPNCPLCRSCLRCDQFDKSPFKPIMADRIHPSFHDHVPFQISHSHSVIQSVMEITLCSNNDDDNHGVGGGVPVFGATMQVP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05882 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 124 IPR013083 -
Mepo3g05882 192 PANTHER RING-H2 FINGER PROTEIN ATL16 3 158 IPR044600 GO:0016567|GO:0016740
Mepo3g05882 192 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Mepo3g05882 192 SMART ring_2 77 118 IPR001841 -
Mepo3g05882 192 FunFam Putative RING zinc finger domain superfamily protein 45 123 - -
Mepo3g05882 192 Pfam Ring finger domain 76 119 IPR001841 -
Mepo3g05882 192 SUPERFAMILY RING/U-box 58 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05882 Mepo-Chr3 73137191 73137769 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05882 49 147 C3H Transcription Factor Family AT3G18930 47.273 8.63e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05882 - K19041 gmx:100806115 134.035