Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05877 ATGGGTGGCAATGGTAAACACAGGTGGAAAATTTCTTTCCATCGTTCTTCTTCTCAATCCAAACAACAACCTCCTAAAGAGTTTCTATGTCCCATTACTGGGTCATTAATGTCCGACCCGGTCGTAGTATCTTCGGGTCAAACGTTTGAACGTATCTCCGTTCAAGTCTGCACTGATTTAAACTTCACCCCAACCCTCCAAAACGGAACCCGACCCGATTACTCAACAATCATCCCAAACTTAGCCATCAAAACAACCATCATAAACTGGTGCGATAAAACCCGTACTGTACACCCAGCCGCACCGGATTACACCACCGTGGAGAATATTGTAAAGGAAAAAATGGCGGCGTCAACGGCGGAGAAAGAGGATCTGATTAGGGTTTCTGAAAAGGAGCTGTTAAACGCGGTGGCGGAGAATCCACCGGTGATATTCTCACACGCCGTGACGGAGTTAGGTACACGTGGCAACCATTTCAACTCGGGATCTTCTTCAGAAGAATCGGTTATCATTGCGGCGAGTCCTGGAACACCGTTACCTTTCACTCTTCGTCCAACGTGTTTTTCACCTTCTTCATCTTCTTCGTTCGAGATCGAAGTTCAAAACCCTAACGTTCCTGTTTCGGAAGAAGAAGAAACCTTATTGAAGAAGCTGAAGAGTAAAGAGGTTTTTGAGCAAGAACAAGGTTTAGTTTCGCTTAGGAGTATTACGAGGAACAGAGAAGAAGCTAGGGTTTCGTTATGCACGCCGCGGATTTTATCGGCGATTCGTTCTTTGATTGATTCACGTTATGTTGTTGTTCAGGTCAACGCTGTTGCTTCGTTGGTTAACCTTTCGTTAGAGAAATCTAACAAGATGAGAATTGTTCGGTCAGGATTTGTTCCTTTTCTGATTGATGTGTTGAAAGGGGGATTCAGTGAATCTCAGGAACACGCTGCGGGTGCGTTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCTATTGGTGTTCTTGGTGCGTTGCAGCCGTTGATGCACGCACTGAGGTCGGAATCTGAGAGAACGAGGCATGATTCAGCGCTTGCGCTGTATCATTTGACGTTGGTTCAGAGTAATAGAGTTAAGATGGTGAAACTTGGGGTGGTTCCGACGCTGCTTTCTATGGTGATGACGGGGACAATGGCGAGTAGGGTGTTGTTGATTTTGTGTAATCTGGCAATGTGCGTGGAGGGAAGGACTGCAATGTTGGACGCCAATGCAGTGGATTGTTTGGTGGGTTTGTTGAGGGGGAATGAGCTGGACTCCGAGGCGACAAGGGAGAATTGTGTGGCAGCATTGTATGCATTAAGTCATGGGAGTTTGAGGTTTAAAGGATTGGCGAAGGAAGCAAAAGCGGTGGAGGTTTTGAGGGTGATTGAGGAGACGGGGACAGATCGGGCGAGGGAGAAGGCTAAAAGGGTGTTGGAGAAGATGAGGGGTTTTGGCGATGGTGATGATGAAGATGGTTCAGAGTTTGATAGTCTTTTTGAATCGGGTGGGTTGACTCGAACGAGGTACCGGGTTGCCGGAGGTAGGAACAATAACCTTGTCAACTCAACTACATTTTAG 1590 0.466 MGGNGKHRWKISFHRSSSQSKQQPPKEFLCPITGSLMSDPVVVSSGQTFERISVQVCTDLNFTPTLQNGTRPDYSTIIPNLAIKTTIINWCDKTRTVHPAAPDYTTVENIVKEKMAASTAEKEDLIRVSEKELLNAVAENPPVIFSHAVTELGTRGNHFNSGSSSEESVIIAASPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPVSEEEETLLKKLKSKEVFEQEQGLVSLRSITRNREEARVSLCTPRILSAIRSLIDSRYVVVQVNAVASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGFSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKMVKLGVVPTLLSMVMTGTMASRVLLILCNLAMCVEGRTAMLDANAVDCLVGLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTDRAREKAKRVLEKMRGFGDGDDEDGSEFDSLFESGGLTRTRYRVAGGRNNNLVNSTTF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05877 529 FunFam RING-type E3 ubiquitin transferase 7 98 - -
Mepo3g05877 529 SMART arm_5 240 280 IPR000225 GO:0005515
Mepo3g05877 529 SMART arm_5 281 321 IPR000225 GO:0005515
Mepo3g05877 529 SMART arm_5 402 445 IPR000225 GO:0005515
Mepo3g05877 529 SMART arm_5 322 362 IPR000225 GO:0005515
Mepo3g05877 529 MobiDBLite consensus disorder prediction 1 27 - -
Mepo3g05877 529 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Mepo3g05877 529 Gene3D - 207 486 IPR011989 -
Mepo3g05877 529 SUPERFAMILY RING/U-box 12 97 - -
Mepo3g05877 529 SUPERFAMILY ARM repeat 212 482 IPR016024 -
Mepo3g05877 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Mepo3g05877 529 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Mepo3g05877 529 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Mepo3g05877 529 Pfam U-box domain 25 94 IPR003613 GO:0004842|GO:0016567
Mepo3g05877 529 PANTHER U BOX DOMAIN-CONTAINING 18 485 - -
Mepo3g05877 529 FunFam RING-type E3 ubiquitin transferase 209 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05877 Mepo-Chr3 73076107 73078376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05877 1 529 U-box Gene Family AT5G65200 58.111 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05877 - - gmx:100784564 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g03762 5 47078308 47080584 Mepo3g05877 3 73076107 73078376 ECH
Mepo3g05877 3 73076107 73078376 Mepo3g05877 3 73076107 73078376 ECH