Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05866 ATGACTCCAACCCAACGCCGTCCCTTATCCTTCCCAGCAGTCCACCCCTGCAAATCCATCTCTCCTTCAACCCTCTTAACTTCCCTAATCACTCTCTCACAAAACATATGCACTTTTCAACCAAATACCTTCCCCACTCAAAAACCAAACGCTAGAGAAACAAAACGCCAAATCCAAATTCTCCTCATATTCTTCCAAGACCTTCAATCAGATAACTCTGTCATCCTGAAACCAAAACCAATCATCCCCGTCTTCTCCGAACTTCACTTCACACTACAAAAAATTCACTTCTTATTCCAAGATTGTTCAATCCAAGGCGCGGGTCTCTGGTTGCTTGTCAAATTTCAATTTGTGGGTACACAGTTTCATCTTCTCATCAGCTCCGTATCAAAATGTCTTGCCGCGTTACCCCTTAACCTCATCGATGTGTGCGATGAGGTTAAAGAGGTAATTCAATTACTAACCAAACAAGCTAGAAATATCCAGCTAGAATTTGATCATAATGATGAATACACAGCCAAACGCGTCAACTCAATTTTGAATCAATTCGAACAAGGAATTGAACCTGAGGTAGATTCCATCAAACAAGTACTTGATTATCTTCGAATCAAAACTTGGTTCGATTGTAACAACGAAATCAAATTCCTCCAACAGGAAGAACGAGAGAAACATCAACATCAAGAGAAAGAAGTTCATCTGTTGAGTGGTTTAATAGGTTTTTTGTGCTATTGTCGTGTGGTAATATTCGAAACACTAGATTTTCAACTGCTAAGCCACAAAACCGAAATCAGGTGCACAGCAGAGATGTTAAACTACATAACACCGGATGATTACCGTTGTCCAATTTCTCTGGAACTAATGACAGATCCTGTAACTGTTTCCACGGGCCAAACATACAACAGAACCTCAATTCAAAAATGGTTTAAAGCAGGAAACATGACATGTCCAAAAACAGGAGAAAGACTCATTTCCACTGAGCTTTTTCCCAACACAGCACTTAAAACACTTATCCAACAATTCTGTTATGATAACAAAATTTCAATTTCAACATCCAAGCTCCACATCAGCAAAACCGCAGCCACCATTAATCCTGGTAGTCCGGCTGCAGCACACGCCATACAATTCACGTCATGGTCATTAGCTCGGAGACTAGTTTTCGGAACAGAGGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTTGCAAAGTCAAATGTTTTCAACACGGCGTGTTTGGTTGAAATTGGAACTGTACCACCGTTGATTGATCTTGTTCTAACTTCAACAACGCAAGAGAACGCAATCGCTGCTCTTTTGAAGCTTTCGAAGCATACCAATGGCCGCGAAGTTATCATGGAGAGTAGAGGCTTAAAACCTATTGTTACAGTTCTCAGAAGAGGATTTAGTTTAGAAGCACGTCGAGTTGCAGCTGGTATAATATTTTACCTCACTTCGGTGAAAGAGTACAGAAAATTAATAGGCGAAAATTCAGAGGCAGTTTCTGGTTTAGTTGAATTGATAAAGAAAGGATCAATTCGAGGAAAAAAGAACGCGGTGCTTGCAATTTTCGGGTTGTTATTGCTTCATAAGAATCACTCTAAGGTGCTTAACTCTGGTGCTGTTCCGGCTATTGTTAAAGTTTTACGTTCTTCAGATAAAGGTTATGTTGTTAATGATTGTTTAGCGGTTTTGGTAGCATTGGCGGAGAATGTGGAAGGTGCTCGTGCTGTATTAGAATGCTCAGGTTTGTCTTTGGTTATCGAGATTTTGCAATCTGCAAATTCGCGTGCTGAGAAGGAGTACTGTGTTTCCATTTTGGTTTCACTATGTGTTAATGTTGGTGGAGAGGTTGTTAGTGTTTTGGCTAAGGATGCTTCGGTGATTATGCCTTCGCTTTATGCGATTCTTACTGATGGTACTCCTCAAGCGGAGAAGAAAGCGCGGAAACTTATTAATGTCTTGCAAGAATTTGATGAGAAGAGGACTTTGGGATTGGTAGGTTCTTCTGTTATGCAGCAAAGATTGCTTCAGTTGAATTAG 2043 0.4033 MTPTQRRPLSFPAVHPCKSISPSTLLTSLITLSQNICTFQPNTFPTQKPNARETKRQIQILLIFFQDLQSDNSVILKPKPIIPVFSELHFTLQKIHFLFQDCSIQGAGLWLLVKFQFVGTQFHLLISSVSKCLAALPLNLIDVCDEVKEVIQLLTKQARNIQLEFDHNDEYTAKRVNSILNQFEQGIEPEVDSIKQVLDYLRIKTWFDCNNEIKFLQQEEREKHQHQEKEVHLLSGLIGFLCYCRVVIFETLDFQLLSHKTEIRCTAEMLNYITPDDYRCPISLELMTDPVTVSTGQTYNRTSIQKWFKAGNMTCPKTGERLISTELFPNTALKTLIQQFCYDNKISISTSKLHISKTAATINPGSPAAAHAIQFTSWSLARRLVFGTEEQKNKAAYEIRLLAKSNVFNTACLVEIGTVPPLIDLVLTSTTQENAIAALLKLSKHTNGREVIMESRGLKPIVTVLRRGFSLEARRVAAGIIFYLTSVKEYRKLIGENSEAVSGLVELIKKGSIRGKKNAVLAIFGLLLLHKNHSKVLNSGAVPAIVKVLRSSDKGYVVNDCLAVLVALAENVEGARAVLECSGLSLVIEILQSANSRAEKEYCVSILVSLCVNVGGEVVSVLAKDASVIMPSLYAILTDGTPQAEKKARKLINVLQEFDEKRTLGLVGSSVMQQRLLQLN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05866 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 457 IPR000225 GO:0005515
Mepo3g05866 680 PANTHER U BOX DOMAIN-CONTAINING 77 655 - -
Mepo3g05866 680 Coils Coil 144 164 - -
Mepo3g05866 680 CDD RING-Ubox_PUB 275 327 IPR045210 -
Mepo3g05866 680 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Mepo3g05866 680 Gene3D - 372 672 IPR011989 -
Mepo3g05866 680 Pfam U-box domain 275 345 IPR003613 GO:0004842|GO:0016567
Mepo3g05866 680 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Mepo3g05866 680 FunFam RING-type E3 ubiquitin transferase 274 346 - -
Mepo3g05866 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Mepo3g05866 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Mepo3g05866 680 SUPERFAMILY RING/U-box 273 346 - -
Mepo3g05866 680 FunFam RING-type E3 ubiquitin transferase 354 666 - -
Mepo3g05866 680 SUPERFAMILY ARM repeat 387 655 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05866 Mepo-Chr3 72989989 72992259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05866 2 663 U-box Gene Family AT1G10560 39.354 1.52e-154 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05866 - - gmx:100810963 779.245