Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05850 ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCAATGTCTGGTGACATGCTAACATGTTCAAGGCCATCATCCATGATAGAGAGGAGGCTAAGACCACCACATGACCTATCCCTAAAATGTCCAAGGTGTGATTCAACTCACACCAAATTCTGTTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACACTTAGGAACATCCCTGTTGGTGGAGGCTGTAGAAAAAACAAAAAAGTTTCTTCAAAAAAATCAAATGATCACTTGGCTAATAGTAATATTCAAAACCAACCACATCATGTACCTTCCTACCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTCTCTCACCTAAGTAACTTATTTGGAGCTAATGGAGCACTAGGAAACCCTAATTTCATGGAGAACAAGTATAGTAATGTTGGCATGCTTGAAAACCCTAGGCCTATTGACTTCATGATGGAAAGTAAGTTAGAAGGTATAATTGGGAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATAGTGATCATATGAATATGAATATGGGTGTTGGGATTGGAGGAGATATGATGAATGGCCAAAATGGGTTGCCACAGAATTTTCATCATGCATTTGGTGGAATGTCATTTGAAGGAGGAAACAATAGCAATGGTGCTTATTTAATGGACTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATGAGGATCATAACGTTTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCACTTGAATGGCAGCAAGATCAAGGTTGTTCTGATGCTGGAAAAGGTCAGTCATTTGGGTATGGATCATGGAGTGGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTAA 1011 0.3907 MGLSSLHVCNMESSADHWLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANSNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLFGANGALGNPNFMENKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFGGMSFEGGNNSNGAYLMDSCQRLMLPYDANDEDHNVSIDVKPNPKLLSLEWQQDQGCSDAGKGQSFGYGSWSGMMNGYGSSTTNPLING 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05850 336 MobiDBLite consensus disorder prediction 122 144 - -
Mepo3g05850 336 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Mepo3g05850 336 MobiDBLite consensus disorder prediction 110 144 - -
Mepo3g05850 336 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Mepo3g05850 336 Pfam Dof domain, zinc finger 60 115 IPR003851 GO:0003677|GO:0006355
Mepo3g05850 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 215 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05850 Mepo-Chr3 72788119 72790279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05850 1 334 C2C2-Dof Transcription Factor Family AT5G62940 42.494 6.59e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mepo3g05850 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05850 - - gmx:100806697 460.299