Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05843 ATGGATTTTCAGACAAATTTTTTACAAGAAAATTACCACTTGAAACCCAACATAAAAAATTATGAGAATCCTTTTGGAGTGGTTCCTTCATCTCATGGATTCTTTCAAGATTTTAATCACATTGATAAATTTAATGTGAATAGTAGTACCTTTTTCAATCCTGTTTCCGGGGTCAAAAATTTTGATCTTAGTGATAATTTTACCTATGATGTTCATCATAATTTCAAGTCTTTTGCAGAAAACAATAGTGGTAATGGTCATGCTTATGTTATGGATAATTTCCTATATGGAGGTTATGGCTTGAACAATAACCTTTCTCAAAGGAATAATCAAATGGAAATGATGGTTACAAACCAAAACTATTTTCCATTTAATATTTCTCAAGAAACCAAGCCTTTGAATAGTGTTGTACCAGATGAAGTCTCATGCATATCCTCAGTGAATTATTACAAAAGAGTTGGCTTGAACAGAAATAATAAGGCATATCCTTATGCCTCTAGAAAGCCTGAGAAAGTTAAAAAGAAGATCAACTTCATAAAAGGGCAATGGACAGTAGAAGAAGATCGGTTGTTGGTTCAGCTGGTTGGAGAACATGGTTTGAGGAAATGGTCTCATATTGCTGAGAATTTGCCTGGTAGAATAGGAAAACAATGCAGAGAAAGATGGCATAATCATCTAAAGCCTGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAACATATTGATCAAAGCACATGAAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAAGGTTACCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAATACTCCAAAAGAAAGGGTAGATCAAAGTACCCTAAAGGAACTCTTCTACAAAAATATATCAAGAGCTTGAACCTAGATGAAAACCCTCCAAAAGATTATAGAAGAAAACCTTCAGCTAATGCTATGAAAAACAAAACCAACAGAAGCACAACATTATCCTCTCAGTCTCAACAAACTGAACAATATTTTCCTAGTGATCAGTGTTTGGTACCAACTTGTGATTTTGATGATGTCCCGGATTTTTCTTTCGATGAGAATTTGTTTCAAAATGGGTGTAGTATTGATTCTCTACTAGATGATATGCAATGTGCTGATCAAATTATGGAAGGAAAGAAACATTTTGATGTTGAGACAGAAATGCCACTAGATATTGTGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATTGAGATGGTTTTCTCATCAGGTCAAGGAAAATTTTCAAGTGACTCATATTTTGGTAATGACATCAACATTGGTTTGTGA 1338 0.3438 MDFQTNFLQENYHLKPNIKNYENPFGVVPSSHGFFQDFNHIDKFNVNSSTFFNPVSGVKNFDLSDNFTYDVHHNFKSFAENNSGNGHAYVMDNFLYGGYGLNNNLSQRNNQMEMMVTNQNYFPFNISQETKPLNSVVPDEVSCISSVNYYKRVGLNRNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVGEHGLRKWSHIAENLPGRIGKQCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKGRSKYPKGTLLQKYIKSLNLDENPPKDYRRKPSANAMKNKTNRSTTLSSQSQQTEQYFPSDQCLVPTCDFDDVPDFSFDENLFQNGCSIDSLLDDMQCADQIMEGKKHFDVETEMPLDIVESMLGVEVKKEMDLIEMVFSSGQGKFSSDSYFGNDINIGL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05843 445 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Mepo3g05843 445 FunFam Transcription factor MYB119 233 297 - -
Mepo3g05843 445 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Mepo3g05843 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Mepo3g05843 445 CDD SANT 183 226 IPR001005 -
Mepo3g05843 445 FunFam Transcriptional activator Myb isoform A 179 232 - -
Mepo3g05843 445 Pfam Myb-like DNA-binding domain 180 226 IPR001005 -
Mepo3g05843 445 Pfam Myb-like DNA-binding domain 235 274 IPR001005 -
Mepo3g05843 445 Gene3D - 179 232 - -
Mepo3g05843 445 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
Mepo3g05843 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
Mepo3g05843 445 MobiDBLite consensus disorder prediction 305 319 - -
Mepo3g05843 445 MobiDBLite consensus disorder prediction 320 338 - -
Mepo3g05843 445 PANTHER MYB PROTEIN-RELATED 157 335 - -
Mepo3g05843 445 MobiDBLite consensus disorder prediction 305 338 - -
Mepo3g05843 445 CDD SANT 235 277 IPR001005 -
Mepo3g05843 445 Gene3D - 234 300 - -
Mepo3g05843 445 SMART sant 231 279 IPR001005 -
Mepo3g05843 445 SMART sant 179 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05843 Mepo-Chr3 72710759 72712779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05843 72 385 MYB Transcription Factor Family AT4G18770 49.541 1.35e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g05843 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05843 K09422 - gmx:100781456 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05843 3 72710759 72712779 Mepo3g05843 3 72710759 72712779 ECH