Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05785 ATGTCTATCACTTCCACCACTCCCCTCTTCAAATCCCTAACCATGGCCGAATCCTGCCTCCTCTCTTCCCACACCAAATCCAAACCTACCTTCTTCTCCCTTCCCTCCAAATCCATCAATCTCCATCTCTCCCTCAAAACCAATCGCTCTTTCTCTCCCTTGTTCGTTGCTCAAGAAAGCGACACGCTCACCACTTCTCTAGACGAAGAACCTGAATTGAGTCTCGATTGGGAGCCCACTCCCGACGCCGCTGAAACTGAAACCGGTGCTGATGATTCTGCTGAAGCTGATTTTGTCCAACCACCTGAAGATGCCAAATTATATGTTGGTAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCCATGCTTTTTGAACAAGCTGGAACCGTTGAGATTGCTGAGGTTATTTATAACAGAGAAACTGACCGGAGTCGTGGTTTTGGATTTGTAACCATGAGTACCGTTGAAGAAGCCGAGTCTGCTGTCGAGAAGTTTAACGCCTATGACTACGATGGAAGATCGTTGGCTGTTAACAAGGCTTCTCCAAAAGGATCTCGGCCCGAGCGTGCACCTCGCACTTTTGAACCTGTCATAAAAGTTTATGTTGGTAACTTGTCATGGGAAGTTGATAATAGTAGGCTCGAGCAAGTTTTTAGTGAACACGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGATTTGGCTTCGTCACAATGTCCGATGAAACGGAAATGAATGATGCCATTGCCGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAGCGTTGCCGAAGACAGGCCCAGACGCGGCTCCTTTTGA 855 0.4702 MSITSTTPLFKSLTMAESCLLSSHTKSKPTFFSLPSKSINLHLSLKTNRSFSPLFVAQESDTLTTSLDEEPELSLDWEPTPDAAETETGADDSAEADFVQPPEDAKLYVGNLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAESAVEKFNAYDYDGRSLAVNKASPKGSRPERAPRTFEPVIKVYVGNLSWEVDNSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRGSF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05785 284 PANTHER OS02G0815200 PROTEIN 22 279 - -
Mepo3g05785 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Mepo3g05785 284 MobiDBLite consensus disorder prediction 63 95 - -
Mepo3g05785 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Mepo3g05785 284 SUPERFAMILY RNA-binding domain, RBD 100 193 IPR035979 GO:0003676
Mepo3g05785 284 Gene3D - 58 189 IPR012677 -
Mepo3g05785 284 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Mepo3g05785 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
Mepo3g05785 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 271 IPR000504 GO:0003723
Mepo3g05785 284 Gene3D - 190 284 IPR012677 -
Mepo3g05785 284 CDD RRM2_NsCP33_like 200 275 - -
Mepo3g05785 284 SMART rrm1_1 200 273 IPR000504 GO:0003723
Mepo3g05785 284 SMART rrm1_1 106 179 IPR000504 GO:0003723
Mepo3g05785 284 FunFam 31 kDa ribonucleoprotein, chloroplastic 189 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05785 Mepo-Chr3 72040691 72043200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05785 107 281 Eukaryotic Initiation Factors Gene Family AT3G16380 37.433 1.13e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05785 - - tpra:123897635 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01453 1 14320621 14323197 Mepo3g05785 3 72040691 72043200 ECH
Mepo3g05785 3 72040691 72043200 Mepo3g05785 3 72040691 72043200 ECH
Mepo1g01453 1 14320621 14323197 Mepo3g05785 3 72040691 72043200 PCT