Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05774 ATGACAAACACGCCTTTCTCTTTGGTTTTATTGTTCTTCTCTCTTTTCATTCCTACCCTCACTTCCTCTTCACCTGTTCAAAATCCTGAATTGGTAGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTTCAGCTAGGAGGAATTTAGGGTACCTATCCTGTGGGAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACTCCAATTGGGAAAAAAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAGAATGCCATTGGTGGAAAGAACGGTAAGATTTACGTTGTAACCGACGCGGGCGATGACAATCCGGTGACCCCAAAGCCCGGAACACTTCGCCACGCCGTGATCCAAGCGGAACCGTTATGGATAATTTTTGCCAGAGACATGGTGATCAAATTAAAAGAAGAGTTAATCATGAACTCTTTCAAAACAATTGATGGTAGAGGTGCTAGTGTGCATATTGCTGGTGGTCCATGCATTACCATACAATATGTCACAAATATCATTATCCATGGGATACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGACATTTTGGGTGGAGGACAATATCGGACGGTGATGGTGTGTCTATCTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTGAAGATGGTTTGATTGATGCTATTCATGGTTCTACCGCTATAACGATCTCTAACAATTACATGACACACCATGATAAAGTCATGTTGTTAGGTCATAGTGACTCTTATACTCAAGATAAAAACATGCAAGTCACGATAGCTTTTAACCACTTTGGTGAAGGACTCGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTTCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCAACCATTAACAGTCAAGGAAACAGATTTGTTGCACCTAACAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCAGAGAGTGAATGGAAGCATTGGAATTGGAGGTCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTCACTAAATCAGGTGGTGGAGCCTCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCTATAGTTGGTTCCATTACAATAGGTGCTGGTACACTTAATTGCAAGAAAGGTTCTCCTTGCTAG 1221 0.4193 MTNTPFSLVLLFFSLFIPTLTSSSPVQNPELVVQEVNRKINASSARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDAGDDNPVTPKPGTLRHAVIQAEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESEWKHWNWRSEGDLMVNGAFFTKSGGGASSSYARASSLSARPSSIVGSITIGAGTLNCKKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05774 406 SMART amb_all 132 329 IPR002022 -
Mepo3g05774 406 Pfam Pectate lyase 139 323 IPR002022 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Mepo3g05774 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mepo3g05774 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Mepo3g05774 406 Gene3D - 57 399 IPR012334 -
Mepo3g05774 406 SUPERFAMILY Pectin lyase-like 34 388 IPR011050 -
Mepo3g05774 406 FunFam Pectate lyase 57 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05774 Mepo-Chr3 71925775 71928323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05774 1 406 Polysaccharide Lyase AT5G63180 78.240 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05774 K01728 - gmx:100779940 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05774 3 71925775 71928323 Mepo3g05774 3 71925775 71928323 ECH
Mepo1g01460 1 14407369 14410027 Mepo3g05774 3 71925775 71928323 ECH
Mepo3g06272 3 76846462 76848272 Mepo3g05774 3 71925775 71928323 ECH
Mepo3g05774 3 71925775 71928323 Mepo1g01460 1 14407369 14410027 ECH
Mepo1g01460 1 14407369 14410027 Mepo3g05774 3 71925775 71928323 PCT