Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05771 ATGATGATGGATGGACGGCGGCATTCTGTCGATATACCGATTTCTAAGGCTCTTGTAGCATTGAGGAGAGTCAGGTCATTGAAGGATCCATCAACCAATTCTGCTACCAATCACTCTCCTTTGATTGACAACTTGCACTGGGAAAATGGTTCTGGCAATGGGTTTTCTCTGATGTTTCCGGATGCTTTTGATTCTGATGATAACCTTGCTAGTTCAAGGAATTTAGGATTTAAAGGGGGAAGAGAGCTGGATGCAACCAGTTTGGAATTGAATCATGGACTGTTGAATTCAAGACCAAATCGACGGAGTGTTTATGGAAATAAATCACCTAGTGAAAGCTGCGGTAGCAACCATGGTGGTAAAGGATTGGATATTAATGATTTCAAGGATGGGGGGTTATATTATCGAGAAATTGGAAGATCGTCTAAATTAGGGAGAATGCCAGCTAGAAAACTTCTACGCAAGAATCAAGTTAAGCCATCTGATGTGGTTGGAGATATTGCTAGCAATTTGAGCAGTCCGTGCCTTTGTGTTCGTGATGCTTTATCACCCCAAGGTTCCTTGGCACTTATAAATCAAGATTTTGGTGTTCTAGATAATAGGGAAAATGGATGTGGAAAAAACTGTTGTTTGTCAAATTCTCCAAGGTTTAGAGAATCAAATCTTTGTTTTGGGAAAGAAGACCGCTCCTTGGTATTGCACTGTGTTGATGACACGGATCTTCATGGACATAGAAATGCGAGACACAATGGTGGCGAAATTAGTCCAAATTTAGAAACTCCTAGAATGTTATCTATGAAATTTAGACCTGTATCATTTGATGATTTGGTGGGACAAGATATGGTAGTTAAGTCTCTTTTGGGTGCACTCTCTAGTAGAATGATAACATCATTTTATCTCTTCCATGGTCCACGTGGTACCGGCAAGACCTCTGCCTCAAAGATATTTGCTTGTGCACTGAATTGCCTCTCTAATAAGAAGCAAAAACCATGTGGCCTGTGTAGAGAATGTGTTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAAGAAGTTGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCCCTCGTTAAGAATGCGTGTACACCTCCCGTTTCCTCTCGTTTTAAGGTTTTCATTGTTGACGAGTGCCAGTTATTGAACCCCGAGACATGGGCGTGCCTTTCAAATAACCAAGATAACATTTCTCAACATGCAGTTTTTGTGATGATAACTCCTGAATTGGATAAGCTTCCACAAAGTGCAATTTCCCGGGCTCAGAAGTATTACTTTCCGAAGGTTCAAGATGCTGACATTGCTTGCAAATTAGAAAAAATTTGTGCAGAAGAAGGTCTTGATTTTGAACAGGCTGCTTTGGACCTTATTGCTGCAAGATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATCAAAATTTCCTTAGTTTATGAGCTCACTGGGATTGTTTCCGACGATGAATTGCTTGATTTGCTTGATCTGGCTTTGTCACCTGACACAGCAAATACTGTTATAAGAGCTCGCGAGCTGATGAGATCAAGGATCGATCCTTTGCAACTTGTGTCACAGTTGGTGAATCTCATAATGGACATCCTTGCGGGGAATCATGAAAATGGCGGTGATGAAGTCAGAAGTAAATATTCTAGTAGATATACTTCAAAAGCAGACCTTCAAAAACTAAGCCATGCATTGAGAATATTTACTGAAGCCGAGAAACAGTTAAGAATTTCGAAAAATCAATCGACATGGTTCACTGTAGCTCTTCTTCAGTTAAGCTCAGCTGATTATCCTCCCACAGATGCAGATGGTATCAAGTTGTCTCTGGGAGGTGCATGCAATGGAGATGAGCTTGGGAAGAGCATGGAACATTTTGATGCAGGTAGTTGTGAAAACAAATCATTTAGATTAGTGGCGCAGGAGGACCACGAAGGAACACTGGATGCCGTATGGTATAAAGCTACCGGGCTATGTCAATCTAGTCGGCTCAAAACTTTCCTCAGGAAGAAGGGAAAGTTGTCTTCACTTCTTGTTGATCAATCTACATCTTCTCTTGCTATTGTGGAGTTGGAGTTCAGTCGTCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATTGCAAGTTCCTTGCAGTGCTTATTGGGTTGTAACATTGAGTTGAGGATCATTTATGTTCCTCTTAGCACTTCTAATTCACCAAAGAGGTCATCTTTCAACATCTTTAGTTGTTCGCGCAGAATACAACAGACATCCAATGAACAAGAGAGTGAAATAGACTATGCTGATTACACCTCTGAAAATCCCATTATGAAGAATAAAACACCATCATGTTCTTCCTCCTATTGTGGATCTCAGCTTCCGCCACAAAATTCTTATAACAGAACGGACCCTGTATCGAGTCTGAGAAGTTGTGAAGGGAACTTGCTCAGCTCACGAGAAATATTTTTGAACACGTCTATGCAAGAGATTATGGGAGCATCTTGTTCTGGAGTTGATTCTTCCAAGGAAGAGGGACACAATGGTGTACATTTAGTTCAATCAATCCCCAATTCAGATAATCGGTCTAACTGTTTTCCTCAATCTCTCTGGTTTCAAAAGAAGTCCCGTTCTTCGTATTCATCCAACTTGTCTTTTCAGGGCATCTAA 2703 0.407 MMMDGRRHSVDIPISKALVALRRVRSLKDPSTNSATNHSPLIDNLHWENGSGNGFSLMFPDAFDSDDNLASSRNLGFKGGRELDATSLELNHGLLNSRPNRRSVYGNKSPSESCGSNHGGKGLDINDFKDGGLYYREIGRSSKLGRMPARKLLRKNQVKPSDVVGDIASNLSSPCLCVRDALSPQGSLALINQDFGVLDNRENGCGKNCCLSNSPRFRESNLCFGKEDRSLVLHCVDDTDLHGHRNARHNGGEISPNLETPRMLSMKFRPVSFDDLVGQDMVVKSLLGALSSRMITSFYLFHGPRGTGKTSASKIFACALNCLSNKKQKPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIVDECQLLNPETWACLSNNQDNISQHAVFVMITPELDKLPQSAISRAQKYYFPKVQDADIACKLEKICAEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSDDELLDLLDLALSPDTANTVIRARELMRSRIDPLQLVSQLVNLIMDILAGNHENGGDEVRSKYSSRYTSKADLQKLSHALRIFTEAEKQLRISKNQSTWFTVALLQLSSADYPPTDADGIKLSLGGACNGDELGKSMEHFDAGSCENKSFRLVAQEDHEGTLDAVWYKATGLCQSSRLKTFLRKKGKLSSLLVDQSTSSLAIVELEFSRRHHVSKAEKSWKLIASSLQCLLGCNIELRIIYVPLSTSNSPKRSSFNIFSCSRRIQQTSNEQESEIDYADYTSENPIMKNKTPSCSSSYCGSQLPPQNSYNRTDPVSSLRSCEGNLLSSREIFLNTSMQEIMGASCSGVDSSKEEGHNGVHLVQSIPNSDNRSNCFPQSLWFQKKSRSSYSSNLSFQGI 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05771 900 Gene3D - 257 434 IPR027417 -
Mepo3g05771 900 Pfam DNA polymerase III, delta subunit 279 436 - -
Mepo3g05771 900 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 265 670 - -
Mepo3g05771 900 Gene3D - 500 612 - -
Mepo3g05771 900 SUPERFAMILY post-AAA+ oligomerization domain-like 500 612 IPR008921 GO:0003677|GO:0006260
Mepo3g05771 900 CDD HLD_clamp_pol_III_gamma_tau 438 499 IPR045085 -
Mepo3g05771 900 MobiDBLite consensus disorder prediction 96 118 - -
Mepo3g05771 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 485 IPR027417 -
Mepo3g05771 900 MobiDBLite consensus disorder prediction 96 116 - -
Mepo3g05771 900 FunFam DNA polymerase III subunit gamma/tau 437 499 - -
Mepo3g05771 900 NCBIfam DNA polymerase III subunit gamma/tau 263 609 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mepo3g05771 900 Gene3D - 437 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05771 Mepo-Chr3 71892466 71896038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05771 254 564 Core DNA Replication Machinery Family AT1G21690 23.511 3.36e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05771 - - tpra:123897029 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05771 3 71892466 71896038 Mepo3g05771 3 71892466 71896038 ECH
Mepo1g01461 1 14445035 14449052 Mepo3g05771 3 71892466 71896038 PCT