Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05765 ATGGAACCGTCTCAACAATCTGAATCACATTTGGCTTCTTCTCATGTTGTTCAACATATTTCCCCTGTTTCCAATCATCATCCTGAATCCTTAGATCTTAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAATTTGGATTTGAAAGATGAGGATGGAATTGTGGAAAAAGGTTCAAACTTTGAAGTTGGTGATGAAAAATTGTGTGATGAAGCTGCTGTTCTAGAATCTGATAAGGGACAAGAGTGTCGTGATGATGATGATGAAAATGTGAATGAGAAGGTGAGTGATGATGTTGTTGGAATTGATGATAAAGGTTCAAACTTTGAAGTTGATGATGAAAAATCTGCCACAGTATCTGAGAAGGGACAAGGGTTTCATCAAGTTGATGATTATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGATGATAATGAGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGAGATGTTGATGAAAGAAGCAATGGTGGAGCTGAGCAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTCAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAGGAGAAGAAACCAGGTTTTTAAAGAGAGGGCAGGAGAAAGAGATGTATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGGTCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTAGAGCTCAACTTCCTTGGCCTACCTATTCGTTTGGGTGAGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTTCAGGATATGGTAATGGAAGTTCTATTTCATTGCAAGACGTGTCACAATCATCTACACCCCCGTGGTCTTCTACCAGAAAATTCAATGAAACTGCCCCTTTTGTGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGACTGGAATGGATATCAGGCACCTTTCTATTTATCTGAGAGGAGTATGCATCCACCTTCACAATATGCCGTGAACAACCCAGCTATGGAAACGAATGCTTATATGCACCGTCATAAGCATACACCAGTTGAAGAGTTTCCAGAAAGACCTGGCGAACCCGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAATCGGATCACAAAATTACCTCCATGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGGCCAGAATGTGTGCACTCATTACAGCCGGTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAACAATCCTCTCACACAAACTCGTCTAGTATTGAGGAGGCTGGAAGTGGAGGAGCTAGTGATGCAACAATTTGA 1548 0.4154 MEPSQQSESHLASSHVVQHISPVSNHHPESLDLNQLTQLDDELQNNLDLKDEDGIVEKGSNFEVGDEKLCDEAAVLESDKGQECRDDDDENVNEKVSDDVVGIDDKGSNFEVDDEKSATVSEKGQGFHQVDDYDDDGWNGDYDGWNDDNEVSDWIENEVVSGDVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVRRRNQVFKERAGERDVLEERSSQTECKYYSRSGGCKFGKDCKFGHTRGKFSADQVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGGYDSTSGYGNGSSISLQDVSQSSTPPWSSTRKFNETAPFVPIIISPTPGASPRSSDWNGYQAPFYLSERSMHPPSQYAVNNPAMETNAYMHRHKHTPVEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYSRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSSSIEEAGSGGASDATI 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05765 515 ProSiteProfiles Zinc finger C3H1-type profile. 407 435 IPR000571 GO:0046872
Mepo3g05765 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 409 434 IPR000571 GO:0046872
Mepo3g05765 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 204 IPR000571 GO:0046872
Mepo3g05765 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 297 IPR000571 GO:0046872
Mepo3g05765 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 250 IPR000571 GO:0046872
Mepo3g05765 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 455 479 IPR000571 GO:0046872
Mepo3g05765 515 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Mepo3g05765 515 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Mepo3g05765 515 SMART c3hfinal6 453 480 IPR000571 GO:0046872
Mepo3g05765 515 SMART c3hfinal6 225 252 IPR000571 GO:0046872
Mepo3g05765 515 SMART c3hfinal6 407 434 IPR000571 GO:0046872
Mepo3g05765 515 MobiDBLite consensus disorder prediction 487 515 - -
Mepo3g05765 515 Coils Coil 33 53 - -
Mepo3g05765 515 MobiDBLite consensus disorder prediction 1 29 - -
Mepo3g05765 515 MobiDBLite consensus disorder prediction 485 515 - -
Mepo3g05765 515 SUPERFAMILY CCCH zinc finger 178 208 IPR036855 GO:0046872
Mepo3g05765 515 Gene3D - 410 486 - -
Mepo3g05765 515 SUPERFAMILY CCCH zinc finger 228 254 IPR036855 GO:0046872
Mepo3g05765 515 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Mepo3g05765 515 ProSiteProfiles Zinc finger C3H1-type profile. 225 253 IPR000571 GO:0046872
Mepo3g05765 515 SUPERFAMILY CCCH zinc finger 272 298 IPR036855 GO:0046872
Mepo3g05765 515 MobiDBLite consensus disorder prediction 100 135 - -
Mepo3g05765 515 Gene3D - 220 305 - -
Mepo3g05765 515 PANTHER PROTEIN PHOSPHATASE RELATED 30 499 - -
Mepo3g05765 515 ProSiteProfiles Zinc finger C3H1-type profile. 453 481 IPR000571 GO:0046872
Mepo3g05765 515 SUPERFAMILY CCCH zinc finger 412 437 IPR036855 GO:0046872
Mepo3g05765 515 SUPERFAMILY CCCH zinc finger 451 479 IPR036855 GO:0046872
Mepo3g05765 515 Gene3D - 155 214 - -
Mepo3g05765 515 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05765 Mepo-Chr3 71840364 71844339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05765 403 494 C2H2 Transcription Factor Family AT3G02830 47.312 6.65e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g05765 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05765 - - gmx:100809906 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01464 1 14478259 14482389 Mepo3g05765 3 71840364 71844339 ECH
Mepo3g05765 3 71840364 71844339 Mepo3g05765 3 71840364 71844339 ECH
Mepo1g01464 1 14478259 14482389 Mepo3g05765 3 71840364 71844339 PCT