Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05707 ATGGAAGGAAAAATCAATAAGAACAAGGTGGAAAAAGTTGTATTAGGCTGCTCTTTCATGGGAAAAATCTTCAAATTCAAGACCAACAAGCTCAGAAATTCATCATCTGTTCATTCACTACCCATCAAGACAGTTAACAATACACAACAAAAAGAATCAAAAGGGTCGCCAAATCATGAGTCAAAAGTTCCAACAGAGAATCAAGCAAGAAAAAGCATCACTTTTTCTCACACACCTACAGATTCTGCAAGAAGCTCAATTCAACAGAAAGAGCCTAATGGTAATTCCTTAGGACTTGCAAGAATAAGTACTAGTAGTACTGCTACTACTACTCGTCCGCGCGACAGCGAAACCAAGTCCCCAAGCAAAGATTTAAGCACACCAAAGCTCACTGGAAATTTGCTTATGAATAGTAGCTATAGCAGCCCAAGAACAAGTGTTACAAAGAATAATAAAGAGTTGAATTCTGTGTCTTGTTCTGTGAATAACAGTGTAATGGGGAATATAATGAGGAAAAGTAGTGACGGTGTGTCACAATTTCGAAGTCCTAGAAGCAACAGAATACTAGACCCTGAGGTATTGAAATCAATGGGAAATGAAGCATACAAGCAAGGAAGATTTTCAGAAGCTTTGGCTTTGTATGAACGAGCTATTGCTATTGATTCCAATAAGGCGACTTATCATTGTAATAAAAGTGCTGCTTTAATTGGTTTGGGAAGGTTTCAGCATGCAATTGTTGAATGTGAGGAAGCTATTAGGATTGACCCTTCTTATCCTAGAGCTCATAGCCGTTTAGCGACAATATATTTCAGGTTGGGAGAAGCAGAAAAGGCATTGAACTGCAATAAAGAAACTCCGTACTTTGATTCGGAACTTGATTTCCAAGCTCGGGCTCTTCAAGTTCACTTTAACAAATGCAGTGAGGCTAGGAAAGTCAAGGATTGGAAAGTTATATTGAAGGAAACACAGTTTGCAATATCCTTAGGTGTGGATTCAGCTCCAAAGGTCTATGCTTTACAAACTGAGGCCTTGTTGAAGCTCCTAAGGCAACAAGAAGCATATACAATTTACGAGAAAATGCCAAAATTTGACCTTGATTGGTGTAACAAATTATTTGGACCAGTTTCTAGTGCTTACCTTCTGATGATAGGAGCACAAGTTTACTTGGCAGCCGGCAGGTTTGAGGATGCCGTGACAGCATCACAGAAAGCGGCTAAACTTGATCCAAGCAACACCGATGTGAATGTAGTGGTAAGAAGGACAAGAGCTGCGACATCTGCCAGATTGAGTGGTAACTTGCTCTTCAAGGCATCAAAGTTCACGGAAGCATGTGCGGTATACAATGAAGGACTAGAGTATGATCCATTCAACTCAGTTCTGTTATGTAACAGAGCAGCTTGTCGTTCTAAGCTTGGCCAATTTGAGAAAGCAATTGAAGACTGCAATGTAGCTCTTACAGTTCAGCCTAATTATAGCAAGGCAATGTTGCGGCGAGCTGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGTTGATAAGAGAAAAGCCAGGCGATGAGGAGGTTGCTAGAGCTTTGTTTGAAATCCAACTAAAACTCAAAATGCTACGCGGTGAAGATGTTACGGACTTGAAATTTGGTTCAAATTTGGTTTGCATCTCAAGCAATGATAGGTTTAGACATTATGTAACCTCGCCTGGTATGTCTGTGGTGCTCTTTTGCAACAAGGCAACTCATAAGCAAGTAGTATTGGTGTTGGAGCAAACTTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGACCACCCTTACTTGGCAAAATCAGAAAGTGTGAACTCTGTACCAGCTTTCAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCTGGCAAAAACCATGAGATGTTAGAAAGATCAATTAAATTATATAGCAGCTGA 1971 0.3983 MEGKINKNKVEKVVLGCSFMGKIFKFKTNKLRNSSSVHSLPIKTVNNTQQKESKGSPNHESKVPTENQARKSITFSHTPTDSARSSIQQKEPNGNSLGLARISTSSTATTTRPRDSETKSPSKDLSTPKLTGNLLMNSSYSSPRTSVTKNNKELNSVSCSVNNSVMGNIMRKSSDGVSQFRSPRSNRILDPEVLKSMGNEAYKQGRFSEALALYERAIAIDSNKATYHCNKSAALIGLGRFQHAIVECEEAIRIDPSYPRAHSRLATIYFRLGEAEKALNCNKETPYFDSELDFQARALQVHFNKCSEARKVKDWKVILKETQFAISLGVDSAPKVYALQTEALLKLLRQQEAYTIYEKMPKFDLDWCNKLFGPVSSAYLLMIGAQVYLAAGRFEDAVTASQKAAKLDPSNTDVNVVVRRTRAATSARLSGNLLFKASKFTEACAVYNEGLEYDPFNSVLLCNRAACRSKLGQFEKAIEDCNVALTVQPNYSKAMLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIQLKLKMLRGEDVTDLKFGSNLVCISSNDRFRHYVTSPGMSVVLFCNKATHKQVVLVLEQTCKRFPSVNFLKVEIEDHPYLAKSESVNSVPAFKIYKNGSRVKEIPGKNHEMLERSIKLYSS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05707 656 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 24 652 IPR044534 -
Mepo3g05707 656 Pfam Tetratricopeptide repeat 447 479 - -
Mepo3g05707 656 SUPERFAMILY TPR-like 428 540 IPR011990 GO:0005515
Mepo3g05707 656 CDD TRX_family 565 652 - -
Mepo3g05707 656 SUPERFAMILY Thioredoxin-like 555 643 IPR036249 -
Mepo3g05707 656 Pfam TPR repeat 198 233 - -
Mepo3g05707 656 Pfam Tetratricopeptide repeat 494 523 IPR019734 GO:0005515
Mepo3g05707 656 ProSiteProfiles TPR repeat profile. 378 411 IPR019734 GO:0005515
Mepo3g05707 656 MobiDBLite consensus disorder prediction 33 115 - -
Mepo3g05707 656 Coils Coil 498 518 - -
Mepo3g05707 656 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Mepo3g05707 656 MobiDBLite consensus disorder prediction 123 151 - -
Mepo3g05707 656 Gene3D Glutaredoxin 551 655 - -
Mepo3g05707 656 Pfam Thioredoxin 586 651 IPR013766 -
Mepo3g05707 656 Gene3D Tetratricopeptide repeat domain 190 543 IPR011990 GO:0005515
Mepo3g05707 656 SMART tpr_5 225 258 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 378 411 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 492 525 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 458 491 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 191 224 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 424 457 IPR019734 GO:0005515
Mepo3g05707 656 SMART tpr_5 259 292 IPR019734 GO:0005515
Mepo3g05707 656 SUPERFAMILY TPR-like 190 414 IPR011990 GO:0005515
Mepo3g05707 656 MobiDBLite consensus disorder prediction 33 151 - -
Mepo3g05707 656 Pfam Tetratricopeptide repeat 379 411 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05707 Mepo-Chr3 71159937 71163338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05707 420 557 Calmodulin-binding Proteins AT5G48570 27.451 4.73e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05707 K09527 - gmx:100814381 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05707 3 71159937 71163338 Mepo3g05707 3 71159937 71163338 ECH
Mepo7g01516 7 23956340 23960732 Mepo3g05707 3 71159937 71163338 PCT