Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05627 ATGTCCTTGAGTCCTCCAAGAGAGAGAATAACCAACCAACGTAGAAACTTTCAACTCTACTATTGCTTCCAATGCAACCGCACTGTCCGCGTTGCACCATATAACTCCTCTGACTTGATATGCCCCCGCTGCTTCGGCCAATTCATATGTGAAATAAACATTCCAAGACCAAGACTCGTCGTAGACTTCACCGCACATGATCCTTCCCCAGAAGCGCGTTTACTAGAAGCACTTTCCATCATGCTCGACCCACCCATCCGTCGTTTTAACCCTGAAACCCAAACACGACGCCCACGTCGTGCCACACAAGTTCCTGTGCACCGCCACACAGGAGATCATCACCCAACCCAAACACAACCCGAACCTGAACCCGGGATCCAACACCGGCCACGTACATGGGTCATTCTACAACCTGTGGATCCTTCTTCAAATTCCGATTCAAACACGTTTCAACCTGTGATTTATCCACGGGGAAGACAAGGACCAATTCCACGTGGCGTTGATTCAAGAGAATATTTTTTCGGACCGGGTTTTAACGAACTAATAGACCAAATAACGGAAAATGACCGGCAAGGTCCACCACCGGTGCCGGAAAGAGGTATAAACGCAATTCCAACTGTGAAAATCGAAAGCAAAAATCTGATAGAGAATTCTCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAGCTTCCATGTAAACATATATATCACTCTGATTGCATTGTTCCTTGGCTTAGACTTCACAACTCTTGTCCAATTTGTCGTCAAGAGATTCCCTTTTCTTCTGATGATGATGAAGATGAGTGTGGTGATGAAGGTGGTGGTGGAGGTAGGTTACAAAGGTGTTTGAGGTGGACAAGAATTTCGTCTCTTTGGCCATTCCATGGCAGGTATCGGAGAGTTCATCCCCAAAGAGATAATGGTTCTGGTTCTGGTTCTGCTTCAAGAATAAGGGGTGATTGA 981 0.4618 MSLSPPRERITNQRRNFQLYYCFQCNRTVRVAPYNSSDLICPRCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNPETQTRRPRRATQVPVHRHTGDHHPTQTQPEPEPGIQHRPRTWVILQPVDPSSNSDSNTFQPVIYPRGRQGPIPRGVDSREYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLIENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEIPFSSDDDEDECGDEGGGGGRLQRCLRWTRISSLWPFHGRYRRVHPQRDNGSGSGSASRIRGD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05627 326 SMART ring_2 220 260 IPR001841 -
Mepo3g05627 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 130 265 - -
Mepo3g05627 326 FunFam E3 ubiquitin-protein ligase RING1-like 184 267 - -
Mepo3g05627 326 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Mepo3g05627 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 267 IPR013083 -
Mepo3g05627 326 MobiDBLite consensus disorder prediction 139 162 - -
Mepo3g05627 326 MobiDBLite consensus disorder prediction 88 126 - -
Mepo3g05627 326 Pfam Ring finger domain 219 261 IPR001841 -
Mepo3g05627 326 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Mepo3g05627 326 MobiDBLite consensus disorder prediction 139 154 - -
Mepo3g05627 326 SUPERFAMILY RING/U-box 201 267 - -
Mepo3g05627 326 CDD RING-H2_RNF126-like 220 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05627 Mepo-Chr3 70251734 70252759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05627 192 312 C3H Transcription Factor Family AT1G68180 44.262 7.14e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05627 K11982 - gmx:100787399 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05627 3 70251734 70252759 Mepo3g05627 3 70251734 70252759 ECH