Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05580 ATGTCATCAGATATTCGGATAAGATCAAGGAAAGCTACTTCATCTGATTGCTCCAGCTTTTTACGACCTGGAATTGATATATCTATGCTATTAGGCTATCGATACAATGATAATTCAGATCAACTTACGTCTATTCCAATGTGGATTGATGCAAGAATAAATTCTATACATAGACAGCCTCACAAATCTGATCAATGTTCATGTCAATTTTATGTAAACTTTTATGATGATCAAGGTTCACTTGGTACAGAGGTAAAAACTCTTAATAAAGAGGTTAATGCAATTGGAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACTTGTGAAGGCTTGTTAAAAGAAAATGACACCTCTGAAATTAAGCCTTATAGGTGGGATTCATCAGAAGATTGCTCTTCATTATCACAATCTAGATTACTCGTTGGGAAATTTGTATCCGATCTTTCGTGGTTTGTAATTACATCTTTTTTAAAGGTGGTTTCATTCCATGTAAGATCTGTGCAAAACAAGATTGTGTATCAAGTTATGGGGAATGATACTGATATTATTAGTCCTTGGCTTATAAATGTTGTGAACTTCAACTTAAAAAAGGAATCACTGGTACCTATTGTTTTTCAATTTGATGTATTTCATGATTATGATGGAGAAGAAGATGAAGCACCACCAAAGCCATCAAATGAAGTTGAAGGCTTGCGACGTTCGAAACGTAGGAATGTACAGCCTGAACGTTACGTAGGTTGTGTTGTTGAGAAGTTGGAAGTTGGTAATTTTCGAACGTGTCCCTACAAAAGAGCAACTTATATGATAGAAGATGAAAACTCTTCTTCAGATTCAGAAGAGAATGGTGGTAAGAGTGACCAAAAGGTTAATAAGGTGAATCATTGCAAAGCTATTAATGTGAGCACAAGGAACAAAAATTATGACGGTGATGGCAAGTTTAAGGTACATAAAACTGATGACATTTCTTCCAAATATCATTATTTGACTAATTATATTTCTAGTTCAAAGAAGAATGGTGCTGATGTGTTGAATTTGGAGTACGGCAATGAGCCTACAACAATATCAAGTGATGAAGAAGTTGATGGTAATGTTACTTTGAGAGATTATAATCGTTTCTTCAAAGAGAAGATTAAGAGGAAGAGACTTCATGTTGTGGATGATATGGATTTAGAAACCAAATGGGAAGGGATAAATTTCAAAAAAGGAGCTCCAACAGAAAATTTTCATTCGAGTTATTCGTCTAATAGAAGTCATGTTCATGAAGAACAAGATCATAAAGGTGGTAGAACATTCAATGCTGATGCCTGCAAGGAAATAATAGATAGTTACATGAAGAATTTTGATAGTCTACCAACTGAAGAGGAGCCTACTGTAAATGAGAAGTGGAAGGAAACAAGCATTTTGGAGAAAAAGGTAGAAGAAAAGGTATCGAAAAGCGATGATGAGGAAGAAAATCCTGATGATTTGGCTGCCTTGTGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAACTGCGAAAAAAGCTTTTGAATTTCTTTGGCAAAACATTGCTGGCTCTATGGAACCATCACTCATGGAAAAAAAATCCAACTCAAGTGGTGGCTGTGTTATATCACATGCTCCTGGAGCAGGAAAAACCTTTCTCATCATTTCTTTTCTTCTAAGTTACTTGAAGTTATTTCCAGGGAAACGACCTCTAGTCCTAGCTCCAAAAACCACACTCTACACGTGGCGAAAAGAGTTCAAAAAATGGAAGATTCCTGTGCCGGTTTATCTTATCCACGGCCGTCGAACGTCTCCTGGTTCAAGTTCGACGACACCAAAATCAATGATTCTTCCTGGATTTCCAAGACCTTCTAGTGATGTCAAACATGTTTTGGATTGTCTTGGAAAGATACAGAAGTGGCACTCACAACCTAGTGTTCTTGTCATGGGCTATACTTCATTTTTACAATTAATGAGATCAAAAGATACGAAATTCGCACACAGAAAATACATGGCTAAAGCATTGAGAGAAAGCCCTGGAATCTTGATTCTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGAATATTACTCTCTGGGACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTTCATGAAGTTCTACAAGAGTTAGATTCTAAATACCGAAGGAAAGGCGGAAAAATTGCGAAGAAAGAACGTCATTTGCTTGAGGCGCGTGCAAGAAAATTCTTCTTGAACAACATTGAAAAGAAAATTAATTCAGATATTGATGAGGAGAAGATGCAGGGTCTATATGTGCTGCGAAAAATCACTTCCGGTTTTATTGATGTGTACGACAGTGGAAATTCTTCTGAGACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACGTCCGATGAACAGCATGAGGTTGTACAGAAACTACAGAGGAAAATGGCTGAGAGTACCAGTTACCCTCTTGAGGTTGAGCTTTTGATAACACTCGGATCAATACATCCATGGCTGATCAAAACAGCTGCATCATGTGCAACTAAGTTTTTTGCGGAGGAAGAATTGAAGAAACTAGAAACAAGCAAATTTGATTTGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCTCGAGTAGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCTGTGAGATTCTTAATAGAGTTATTTGAGAAATATTTTCAGTGGCAAAATGGTAAAGAGATTCTGGTACTAACCGGTGAGCTAGACTTGTTTGAAAGAGGGAAAGTGATAGATAAATTTGAAGATCAAAGCAGCGGTTCAAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGTATAAGTTTAACAGCAGCTTCTAGAGTGATTTTTCTGGACTCAGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGACCGGGCCAGCAGAAAATGGTTTATGTGTATCAGTTATTGACGACCGGGTCGATGGAGGAAGATAAGTATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCACATGATTATGAAGAATGAAAAGGCTTCAACAATCTAA 3288 0.3674 MSSDIRIRSRKATSSDCSSFLRPGIDISMLLGYRYNDNSDQLTSIPMWIDARINSIHRQPHKSDQCSCQFYVNFYDDQGSLGTEVKTLNKEVNAIGIDQIFILQRLQHNTCEGLLKENDTSEIKPYRWDSSEDCSSLSQSRLLVGKFVSDLSWFVITSFLKVVSFHVRSVQNKIVYQVMGNDTDIISPWLINVVNFNLKKESLVPIVFQFDVFHDYDGEEDEAPPKPSNEVEGLRRSKRRNVQPERYVGCVVEKLEVGNFRTCPYKRATYMIEDENSSSDSEENGGKSDQKVNKVNHCKAINVSTRNKNYDGDGKFKVHKTDDISSKYHYLTNYISSSKKNGADVLNLEYGNEPTTISSDEEVDGNVTLRDYNRFFKEKIKRKRLHVVDDMDLETKWEGINFKKGAPTENFHSSYSSNRSHVHEEQDHKGGRTFNADACKEIIDSYMKNFDSLPTEEEPTVNEKWKETSILEKKVEEKVSKSDDEEENPDDLAALWEEMNTALTSSYLLDGTAKKAFEFLWQNIAGSMEPSLMEKKSNSSGGCVISHAPGAGKTFLIISFLLSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKIPVPVYLIHGRRTSPGSSSTTPKSMILPGFPRPSSDVKHVLDCLGKIQKWHSQPSVLVMGYTSFLQLMRSKDTKFAHRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRKGGKIAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGLYVLRKITSGFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEVVQKLQRKMAESTSYPLEVELLITLGSIHPWLIKTAASCATKFFAEEELKKLETSKFDLRKGSKVRFVLSLISRVVKNEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEILVLTGELDLFERGKVIDKFEDQSSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDDILREMVEEDKSKAIHMIMKNEKASTI 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05580 1095 SMART ultradead3 505 745 IPR014001 -
Mepo3g05580 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1080 IPR027417 -
Mepo3g05580 1095 Pfam SNF2-related domain 522 793 IPR000330 GO:0005524|GO:0140658
Mepo3g05580 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 739 IPR027417 -
Mepo3g05580 1095 Gene3D - 492 781 IPR038718 -
Mepo3g05580 1095 Gene3D - 817 1094 IPR027417 -
Mepo3g05580 1095 CDD SF2_C_SNF 897 1026 - -
Mepo3g05580 1095 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 901 1062 IPR001650 -
Mepo3g05580 1095 SMART helicmild6 930 1015 IPR001650 -
Mepo3g05580 1095 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 514 1094 IPR044567 GO:0080188
Mepo3g05580 1095 MobiDBLite consensus disorder prediction 219 238 - -
Mepo3g05580 1095 Pfam Helicase conserved C-terminal domain 898 1014 IPR001650 -
Mepo3g05580 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 737 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05580 Mepo-Chr3 69843378 69847974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05580 912 1033 RAD5 or RAD16-like Gene Family AT5G05130 35.772 4.02e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g05580 SNF2_N 4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05580 K10875 - csav:115705141 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05580 3 69843378 69847974 Mepo3g05580 3 69843378 69847974 ECH
Mepo3g05580 3 69843378 69847974 Mepo7g02313 7 34009012 34015413 PCT