Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05574 ATGGATTCCGAGCTCCCCAACAAAGCATTAACCTCCACACGTTTCTCCGACCTAAAACCACCACTCTCCGAACCCGTTCTCCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCCGTTCAAGCCGCCACTATTCCCTTACTCTGCAGCTACAAAGACGTCGCCGTTGACGCTGCCACCGGTTCCGGCAAAACCCTAGCTTTCGTCATTCCTCTTGTCGAAATTCTTCGCCGCTCCGCTTCCAATCCCAAACCTCACCAGGTGCTTGGAGTGATTATATCTCCTACTAGGGAATTAGCGTCACAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGTGAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCTGATATGAAGAAAATTGAGGAAGAAGGGGCAAATGTATTGATTGGCACGCCGGGGCGATTACATGATATTATGAATAGGATGGATATTTTGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAAACAGCGAATGATTCTACAGCATCAAAGAAAATGGAGTCTTCAAAGACACCTTCAGGTCTTCACATTGAGTACATGGAATGTGAGGCAGACAAGAAACCGTCACAGCTTGTAGATTTCCTTGTTAAGAACCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTGGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCTCCCTTCATGGAAAGATGAAGCAGTCTGTCAGGGAGAAGGCACTAACGTCATTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGGCTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTGTTTGTGCATAGGGTTGGTCGAACTGCTCGGCTGGGCAAACAAGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATAAGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATCCACCTGATGTTATACCCGAGATTCGTTCCGCGGCAACAAAAGATCGTGATGTTATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGTAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGGTTCAGGGATAAATCAAGGGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAAAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAAAACTCCTGAAGTACCTACTGCCATGAGAAAGCAAACAGCTAAACAAAGACGTGCTAAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGGTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACTGAGGATTTACTTTGA 1770 0.4299 MDSELPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRSASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLVNVKSMLLVGGVEVKADMKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSTASKKMESSKTPSGLHIEYMECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGVVLPRLSVLKGFSLISLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNPPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKKTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05574 589 Gene3D - 253 481 IPR027417 -
Mepo3g05574 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Mepo3g05574 589 Pfam Domain of unknown function (DUF4217) 417 472 IPR025313 -
Mepo3g05574 589 Coils Coil 503 523 - -
Mepo3g05574 589 PANTHER RNA HELICASE 11 520 - -
Mepo3g05574 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Mepo3g05574 589 MobiDBLite consensus disorder prediction 504 535 - -
Mepo3g05574 589 MobiDBLite consensus disorder prediction 504 558 - -
Mepo3g05574 589 CDD DEADc_DDX55 26 224 - -
Mepo3g05574 589 Gene3D - 2 227 IPR027417 -
Mepo3g05574 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 394 IPR027417 -
Mepo3g05574 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Mepo3g05574 589 FunFam RNA helicase 9 227 - -
Mepo3g05574 589 SMART helicmild6 290 375 IPR001650 -
Mepo3g05574 589 SMART ultradead3 34 234 IPR014001 -
Mepo3g05574 589 CDD SF2_C_DEAD 254 384 - -
Mepo3g05574 589 SMART DUF4217_3 413 476 IPR025313 -
Mepo3g05574 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Mepo3g05574 589 Coils Coil 539 559 - -
Mepo3g05574 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05574 Mepo-Chr3 69742157 69747598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05574 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.679 1.32e-42 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05574 3 69742157 69747598 Mepo3g05574 3 69742157 69747598 ECH