Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05572 ATGGGTGGTAATACTACTTCTCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTGCTCCTTACTTCCCTTCACATGATCCTAAAAAATTTGCAATAGTTCACAAGGTTTTTGGTGCAAGCAACGTTAGCAAAATGCTCCAGGAACTTCCTATTCAACAAAGAGCTGATGCAGTAAGCAGCTTAGTGTATGAAGCAAATGCAAGAGTGAAGGATCCTGTTTATGGTTGTGTTGGAGCAATATCCTTCCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAAATACTCTGCATCCAGATGAAACATGATGATCAACCTCTAATGCAAAATCAAGAAATAGCCCTTGATCATAAATCTTATGATCTTCCTCAGTATTTCAACTTTCCTTCTTCAAGCAATGTAATTCATCATGATTCTTTCTCAAGAGAGAGAATTTTTTGA 480 0.3854 MGGNTTSPCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISFLQNQVSELQMQLAVAQAEILCIQMKHDDQPLMQNQEIALDHKSYDLPQYFNFPSSSNVIHHDSFSRERIF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05572 159 Coils Coil 87 107 - -
Mepo3g05572 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 127 - -
Mepo3g05572 159 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mepo3g05572 159 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05572 Mepo-Chr3 69712466 69713406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05572 1 135 AS2 family AT2G30130 76.978 3.69e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo3g05572 LOB 5.6e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05572 3 69712466 69713406 Mepo7g02310 7 33964855 33965728 ECH
Mepo3g05572 3 69712466 69713406 Mepo3g05572 3 69712466 69713406 ECH
Mepo3g05572 3 69712466 69713406 Mepo7g02310 7 33964855 33965728 PCT