Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05549 ATGAAAGGCATAAAGGGTTATGAGCCACGTGCAAGCTCATCTTGTGCAGCTTGCAAATTATTGAAAAGAAGATGCACACCAGATTGTTTATTTGCACCTTACTTCCATTCTAATGAGTGCAAGAAATTTGCCAAAGTCCACAAAGTATTTGGAGCAAGCAATGTTAGCAAGATACTCATTGAAGTGCCAGAAAAACAAAGAGAAGACACGGTGAATTCTCTTGCTTATGAAGCAGAAGCAAGGCTTAGAGACCCAGTTTATGGATGCATTGGTTCCATAGCTATGTTGCAAAGGAAGATGATGGAACTTCAACATGATTTGGCCATTGCTAAGGAACGTCTTGCTCGTTGTCGCGCCGTTGCTGCAGCTGCTACAATTACTACCACAACAACTCCTTCTGTAATTGATAGTTTGCATTCTGATGTTACTTTGCCTCCATTTCCTGAGTTTTCCACTTCTAATGATCTCAATGATATCTTTTGTCATGGCTCTTCGTCACAATTTTTGGGTCGAAATGAAACAGTGGATGATTTCAATCAAATTCCATATATATTTTGA 558 0.3943 MKGIKGYEPRASSSCAACKLLKRRCTPDCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIAMLQRKMMELQHDLAIAKERLARCRAVAAAATITTTTTPSVIDSLHSDVTLPPFPEFSTSNDLNDIFCHGSSSQFLGRNETVDDFNQIPYIF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05549 185 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Mepo3g05549 185 Coils Coil 93 113 - -
Mepo3g05549 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 130 - -
Mepo3g05549 185 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05549 Mepo-Chr3 69566344 69567222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05549 4 114 AS2 family AT3G11090 76.577 6.29e-62 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo3g05549 LOB 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05549 - - cam:101504923 289.656