Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05546 ATGTCAAGCCCTAATTCTAGATCATTAAACTGGCACTACACTGAGCTTGATGATAGAGACCTAGAAATCAAAGGCAGAACACTTTTCTTTGTTATTGTACTCTTCTCCATTTTCCTTCTAGTTATCGTTCTCTTCTTCTACACACGTTGGGTCTGCCGCTACCACACTCACATCACCACGACATACTCCGCCTCCATCCACGCGCCGCCAGCTCAACCACCACAAGGACTAGACCCTGCTGCAATCAAGAAACTGCCTATTATTCTTCATCAAGCTCCGACGGACCCTGAGAACGGCGCGTGGGAAGAGACGGAGTGTTGTATTTGTCTTGGAGAGTTTAGAGACGGTGAGAAACTGAAGGTTTTACCAGGGTGTGAACATTATTTTCATTGTGATTGTGTTGATAAGTGGTTAACTCATCAATCTAGTTGTCCACTTTGTAGAGGTTCTCTCAAAGTTGAATCTTCTTTTCCTAAGATTTTGATTCAAGAACCACCCATTAGAATTGATATTCAATTCTAG 522 0.4291 MSSPNSRSLNWHYTELDDRDLEIKGRTLFFVIVLFSIFLLVIVLFFYTRWVCRYHTHITTTYSASIHAPPAQPPQGLDPAAIKKLPIILHQAPTDPENGAWEETECCICLGEFRDGEKLKVLPGCEHYFHCDCVDKWLTHQSSCPLCRGSLKVESSFPKILIQEPPIRIDIQF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05546 173 SUPERFAMILY RING/U-box 100 154 - -
Mepo3g05546 173 Pfam Ring finger domain 105 148 IPR001841 -
Mepo3g05546 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mepo3g05546 173 CDD RING-H2_EL5-like 105 148 - -
Mepo3g05546 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 155 - -
Mepo3g05546 173 SMART ring_2 106 147 IPR001841 -
Mepo3g05546 173 FunFam RING-H2 finger protein ATL66 69 153 - -
Mepo3g05546 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05546 Mepo-Chr3 69524357 69525232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05546 2 156 C3H Transcription Factor Family AT3G11110 43.038 2.68e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05546 - - gmx:100803278 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05546 3 69524357 69525232 Mepo7g02290 7 33784979 33785527 PCT