Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05545 ATGAGTATGGAAAACCACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATATTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGTAGTGTTGAAGATAGAGCAGCAAGTGCTTCCAAGAGTCACAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGACCTAAAACGAAAAGCAATGGATGTTAGTAGAGTCATCACAGTTCCAACTGAAATTGATGAAGTATCAATAGACTATAACCATGTTGTTGAAGATGAAATCAACACTAACAAAGTGAACAAATTCAAAGACAACATCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTGGTGCTTTGTTCTAAGGATAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCACATTTCGTATAG 789 0.3663 MSMENHNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDEINTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05545 262 CDD bHLH_AtAIG1_like 67 144 - -
Mepo3g05545 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Mepo3g05545 262 Pfam Helix-loop-helix DNA-binding domain 75 121 IPR011598 GO:0046983
Mepo3g05545 262 SMART finulus 78 127 IPR011598 GO:0046983
Mepo3g05545 262 CDD ACT_UUR-ACR-like 170 205 - -
Mepo3g05545 262 Gene3D - 66 129 IPR036638 GO:0046983
Mepo3g05545 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 125 IPR036638 GO:0046983
Mepo3g05545 262 PANTHER TRANSCRIPTION FACTOR BHLH30 29 258 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05545 Mepo-Chr3 69488414 69490422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05545 3 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.245 1.12e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g05545 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05545 - - gmx:100799687 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05545 3 69488414 69490422 Mepo3g05545 3 69488414 69490422 ECH