Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05538 ATGGAAACCAAGTTCCAAAACTCAACTTTACTTGAATTATCAGCAACAGATGATATTGAAGCTTTCAAAAGGGAAGTAGAAGAAAAGGGCTATGATATCAATGAGGCAGGGTTTTGGTATTGTAGAAAAATAGGATCAAAGAAAATGTGTTATGAAAAGAGAACACCTCTTATGATTGCTTCTTTGTTTGGAAGCCTTAGGGTGGTGAAATATATCATTGAAACAAACATGGTTAATGTGAACATGGCAATTGGTGATGAAAATGTCACTGCATTACATTGTGCTGTTGCTGGTGGTTCTAAATCAAAATTTGAGATTGTTAAGCTCTTGCTTGATGCTGGAGCAGATGTTGATACCCTTGATGAAAAAATTAAGCAGAATTTTCTAGTGCCTAATTCAAAAGAATTAGAAGCTGAGAAGAAAGATTCAGGATATGCTATTGATGCATCATTGCCTGATATAAACAATGGTGTTTTTGTAACAGATGAATTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCGAGGGGTTACACTCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCTAGGAGGAGAGATCCAAGGAAGTATCCTTATAGCTGTGTTCCGTGCCCCGAGTTTCGGAAAGGGGCATGCCAGAAGAAAGATGCATGTGAGTATTCACATGGTGTTTTTGAGTCTTTGCTTCATCCTGCACAATACAGAACAAGGCTTTGTAAAGATGAGATTAGGTGTACTAGGAAAGTGTGTTTCTTTGCACACAAACATGAAGAATTGAGGCCTTTGTATGCTTCTACTGGTTCAGCCATGCCTTCACAAGAATCATTACCAATTTCAAATGTTTCTACACCACCTATGTCTCCATTGGTAGCTGATTCATCTCCTAAGAATGGAAATTACATGTGGAAGAATAAAATCAATCTCACTCCACCTTCATTGCAGCTGAAAAATGCTTTGAGTGCAAGGGATTTGTATCAAGAAATGGACCTCTTACACAGTGTTTCAATGCCACCTTCAACTCCTACTCAATTGCAATCTATGAATAGGTTTCAGCTGAACCAAAATAGGAACCATGTTCAAGCAAGTTATCCATTCAACAATACTGTTTCATCTCCTATGAGAAAATCATCAGCATTTGGATTTGATTCATCAGCTCCTATGGCTGCAGCAGTGATGAATTCAAGGTCTTCAGCCTTTGCGACACGAAGCCAAAGTTTTATGGATCGCGGTGTGTCAAGATACCATATCGGTGCTTCCGAATCCAACAGTAGGATGAACTCTGGTCTCTCTGATTGGATTTCAAATGATTGGGATGAGCTGCATAAGTTGAAAAAATCTGCTTCTTTTGGATTTAGAAATAATATGGTTGCTGCTTCGCCCATGGCATGGCCAGAACATGCTGAACCAGATGTCTCGTGGGTTCATTCGCTTGTTCAAGAGGTTTCCTCTGAGAATTCTGAGATATTTGGTGCTGAGAGGCTACATTATGATCTCTATAAACAGAAGTTATCACCATGGGCAGAGCAGATGGTAGCATAA 1554 0.3925 METKFQNSTLLELSATDDIEAFKREVEEKGYDINEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSLRVVKYIIETNMVNVNMAIGDENVTALHCAVAGGSKSKFEIVKLLLDAGADVDTLDEKIKQNFLVPNSKELEAEKKDSGYAIDASLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKKDACEYSHGVFESLLHPAQYRTRLCKDEIRCTRKVCFFAHKHEELRPLYASTGSAMPSQESLPISNVSTPPMSPLVADSSPKNGNYMWKNKINLTPPSLQLKNALSARDLYQEMDLLHSVSMPPSTPTQLQSMNRFQLNQNRNHVQASYPFNNTVSSPMRKSSAFGFDSSAPMAAAVMNSRSSAFATRSQSFMDRGVSRYHIGASESNSRMNSGLSDWISNDWDELHKLKKSASFGFRNNMVAASPMAWPEHAEPDVSWVHSLVQEVSSENSEIFGAERLHYDLYKQKLSPWAEQMVA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05538 517 Gene3D - 204 266 - -
Mepo3g05538 517 Pfam Ankyrin repeats (3 copies) 41 119 IPR002110 GO:0005515
Mepo3g05538 517 PANTHER UNKEMPT FAMILY MEMBER 12 485 IPR045234 -
Mepo3g05538 517 SMART ANK_2a 52 82 IPR002110 GO:0005515
Mepo3g05538 517 SMART ANK_2a 87 119 IPR002110 GO:0005515
Mepo3g05538 517 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Mepo3g05538 517 Gene3D - 2 141 IPR036770 -
Mepo3g05538 517 SUPERFAMILY Ankyrin repeat 6 122 IPR036770 -
Mepo3g05538 517 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Mepo3g05538 517 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Mepo3g05538 517 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Mepo3g05538 517 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Mepo3g05538 517 FunFam Zinc finger CCCH domain-containing protein 66 161 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05538 Mepo-Chr3 69400550 69402480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05538 138 341 C2H2 Transcription Factor Family AT5G12850 51.709 9.26e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g05538 Ank_2 8.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05538 - - tpra:123894788 785.408