Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05533 ATGGCGGCATCACATAACCACCGTTCGCCACCGCCACAACCACTTTCCGACTCCGATTCCGACGGCGGTGGCTCCTCCACCACCTCACTCCTCCGCCACTCCGACCTCTCCGAATCAATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAACCAATGCCACCACCGCCGACCTCTCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTCTCCTGCCTCATCTGCCTCGAACGCATCAAACCTTCCGACCCAACTTGGTCCTGCACCTCCCTCTGCTTCGCCGTCTTCCATCTCTTCTGTATTCAAAGCTGGTCTCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTAACGCGCCTCTCTGTTTCTGCGGAACACGCCGCGGAAACATCTCTCTGGAATTGTCCTAAATGTAGAGTTGAATATCCCAAAAGGTTAATCCCAAAAATTTACCTTTGCTTTTGTGGTAAATTGGAGAATCCACCCAGTGATGATCCTTGGGTTTTACCTCATTCCTGTGGTGAAGTTTGTGGTCGATCGTTGAAAAATGACTGTGGGCATTATTGTTTACTTCTTTGTCATCCTGGGCCATGTCCATCTTGTCCACAATTGGTTAAAGTTAGTTGCTTTTGTGGGTCCCGTCAAGATGTACGTAGATGTGGTTTCAAGGAGTTTTCTTGTGAAGCACGTTGTGAGAAAAAACTGGATTGTGGTGTTCATAGATGTGCTGAGATTTGTCACCATGGCGATTGTCCGCCGTGTCGGGCGCGTGGTGTTTATAGATGTCAATGTGGGAAAGTGAAAGAGGAGAGGGAGTGTTGTGAACGTGTTTTTCAATGTGGTGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTGAGAAAGGGTGTCATTCTGGGGAGTGTGGTGGGTGTCCTTTACAAGGGAAGAGAACATGTCCTTGTGGGAAAAGGGTGTATGAAGGAATGCCTTGTGATGCTCCTTTGCAGGTTTGTGGTGCAACTTGTGAGAAAACGTTGCCATGTGGGTATCATAGGTGTCATGAACGATGCCATCGTGGACAGTGTATGGAGACTTGTAGGATTGTTGTGAAGAAAAGTTGTCGTTGTGGAAGCCTCAGGAAAGATGTACCTTGCTATCAAGATTTGACATGTGAGAGGAAGTGCCAGACATTGCGCGATTGTGGTAAGCACCCGTGTAAGCGCCGCTGCTGTGATGGAGATTGTCCTCCGTGCTCAGAGATATGTGGCAGGAGGCTTCGCTGTAGGAACCATAAATGCCAATCTCCATGCCATAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATTGCTTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACGGAAATGGATCAAAAGCCACCTAAATGTCGTAAACAATGTCCTATTCAGCCTTTGTGCCGGCATGCATCAATCTCCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGCCTACCTTGTGCAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCTAGGCCTCCTCCTAAACCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGATTGTACAACAAAGTGAAAGTGTTCCCGGCACTCCATGTCCTCCTTGCCCAGAACTAGAATGGAGACCATGTGTAGGGCAGCACTTTGGAGCAGAGAGAATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGATAATTTATGTGGTAATCCTCTACCATGTAGTAATCATTATTGTACTAAAACCTGCCACGCCTTGGAGAACCGATCTTCCATGAACCAGTTACCGAGAAGTGAGGCTTGTGAAGCTTGTTCGCTTTCTTGCCAAAAGGAACGAAAGCCCAAGTGTCAACATCACTGCCCTCGGCGCTGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGTTCATGTCATTGTGGTGCAATGGTCCATGCTTTTGAGTGCATTTATTACAACAGCCTGTCTGCAAAAGATCAAGAGAATGCCCGGTCATGTGGTGGACCATGTCATAGAAAGATGCCAAATTGTACACACCTATGCCCAGAGACATGTCATCCTGGTGAATGCCCAAATCCTGAGAAATGCTCTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACACTGAAAAAAGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCTGGTTGCAATCCAAGCGATGTACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGCAATTCTGACTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAATTGCAATTACGTAAATCTAAAGTTACAGAGGTGAAGGAGCAGCCAGATAATGAAAAATCAGGTCCAAAGCGACGAAAAAAGCGAGAGCGGGTAGTAGAATCGAAGGAACCAACAATATTGCAGAAAATGATTTCCAGAGCAAAGCAGCTTCTTCTATTTATATTTTTCTTGGTCATACTTGTTGCTGCTACTCATTATGGGTACAAGGGACTACTATGGCTCAATGATTGGATGAATAAAGTTGATGAACAACGACAAAGATCTTCACGAATCAGATGA 2628 0.4669 MAASHNHRSPPPQPLSDSDSDGGGSSTTSLLRHSDLSESIFKSYFNFSGHSSTNATTADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSVSAEHAAETSLWNCPKCRVEYPKRLIPKIYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNDCGHYCLLLCHPGPCPSCPQLVKVSCFCGSRQDVRRCGFKEFSCEARCEKKLDCGVHRCAEICHHGDCPPCRARGVYRCQCGKVKEERECCERVFQCGDPCEKKLSCGKHVCEKGCHSGECGGCPLQGKRTCPCGKRVYEGMPCDAPLQVCGATCEKTLPCGYHRCHERCHRGQCMETCRIVVKKSCRCGSLRKDVPCYQDLTCERKCQTLRDCGKHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTIACACGETHFEVPCGTEMDQKPPKCRKQCPIQPLCRHASISKPHKCHYGACPPCRLPCAEEYQCGHACKLRCHGARPPPKPEFTLKPKKKKIVQQSESVPGTPCPPCPELEWRPCVGQHFGAERMMVCSNKSQFSCDNLCGNPLPCSNHYCTKTCHALENRSSMNQLPRSEACEACSLSCQKERKPKCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNSLSAKDQENARSCGGPCHRKMPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKKEWLCQDVQAAHNRAGCNPSDVPKNQFGVGLIPCNSDCKSKVQVVESELQLRKSKVTEVKEQPDNEKSGPKRRKKRERVVESKEPTILQKMISRAKQLLLFIFFLVILVAATHYGYKGLLWLNDWMNKVDEQRQRSSRIR 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05533 875 CDD NF-X1-zinc-finger 392 440 - -
Mepo3g05533 875 SMART znfxneu3 639 657 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 349 369 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 190 208 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 402 421 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 515 560 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 597 629 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 702 723 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 242 261 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 486 507 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 SMART znfxneu3 429 448 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 CDD NF-X1-zinc-finger 285 332 - -
Mepo3g05533 875 CDD NF-X1-zinc-finger 419 467 - -
Mepo3g05533 875 CDD NF-X1-zinc-finger 639 668 - -
Mepo3g05533 875 CDD NF-X1-zinc-finger 232 280 - -
Mepo3g05533 875 CDD NF-X1-zinc-finger 178 226 - -
Mepo3g05533 875 CDD RING-CH-C4HC3_NFXL1 75 144 - -
Mepo3g05533 875 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 51 524 IPR034078 GO:0003700
Mepo3g05533 875 Pfam NF-X1 type zinc finger 597 607 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 640 656 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 295 313 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 242 260 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 402 420 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 423 447 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 190 207 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 349 368 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 Pfam NF-X1 type zinc finger 496 506 IPR000967 GO:0005634|GO:0008270
Mepo3g05533 875 CDD NF-X1-zinc-finger 339 388 - -
Mepo3g05533 875 MobiDBLite consensus disorder prediction 1 30 - -
Mepo3g05533 875 MobiDBLite consensus disorder prediction 790 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05533 Mepo-Chr3 69320724 69327981 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Mepo3g05533 zf-NF-X1 0.00023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05533 K15683 - gmx:100799540 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05533 3 69320724 69327981 Mepo3g05533 3 69320724 69327981 ECH