Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05498 ATGTCTTTTATTGGTACCCAACAAAAATGCAAGGCTTGTGAGAAAACGGTTTATCCCGTTGATCAGCTTTCTGCTGATGGTACTTCTTACCATAAAGCTTGTTTCAGATGCTCTCACTGCAAAGGAACTTTAAAGCTTAGCAGCTATTCATCGATGGAAGGTGTTCTTTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAGCATGGCAACTTTAGCAAGAACAAGAACTTCCAGTCACCTGCAAAGGTAGCTGATGGTGCAACTCCTGTGCTGACAAGGACCCCTAGCAAAGCTGCGGGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGCGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTCGAAAGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACACGGTGGTTGTCCTATAACTCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTACAATCATCTTATCAAGTCTGCATCAATCAAACGTGCAGCAGCCTCCGTTCCAGAATCTTGA 576 0.4392 MSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCKPHFEQLFKEHGNFSKNKNFQSPAKVADGATPVLTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05498 191 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mepo3g05498 191 PANTHER OS06G0237300 PROTEIN 5 111 - -
Mepo3g05498 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mepo3g05498 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Mepo3g05498 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Mepo3g05498 191 FunFam LIM domain and actin-binding 1 104 174 - -
Mepo3g05498 191 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mepo3g05498 191 SMART lim_4 9 61 IPR001781 -
Mepo3g05498 191 SMART lim_4 109 161 IPR001781 -
Mepo3g05498 191 FunFam LIM domain and actin-binding 1 4 74 - -
Mepo3g05498 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Mepo3g05498 191 CDD LIM2_SF3 110 170 - -
Mepo3g05498 191 CDD LIM1_SF3 6 68 - -
Mepo3g05498 191 Pfam LIM domain 110 165 IPR001781 -
Mepo3g05498 191 Pfam LIM domain 10 65 IPR001781 -
Mepo3g05498 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 75 - -
Mepo3g05498 191 Gene3D Cysteine Rich Protein 104 174 - -
Mepo3g05498 191 Gene3D Cysteine Rich Protein 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05498 Mepo-Chr3 68956508 68960466 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mepo3g05498 LIM 1.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05498 K09377 - gmx:100809121 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05498 3 68956508 68960466 Mepo3g05498 3 68956508 68960466 ECH