Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05440 ATGTCAGAGACAACATCTTATTGGTGTTATAGATGCAATCGTTTTATAAGATTAGGCAGACAGGAAACCGTCGTCTGCCCTGATTGCGACGGCGGTTTCCTCGAAGAAATTGAACAACCGCCACAAGTTGATTCCCGCCGCCGACGTTTTCCAGCCGCTGCCATGTACATGATTGGTCAACGTCCAAATTCAGATCATAATCATAATAATAATTCTCGTCCACCTTCTTCCCTCCGTAGAACCCGCCGCAACGGTGGTGACCGGTCACCTTTCAATCCGGTCATTGTCCTCCGTGGCGGTGGGTCCACAGAGGCAGCCACCGAAGGTGGTGGAGGAGGAGGAGGAGAGAGCCGTGGATTTGAGTTATTTTATGATGATGGTGCTGGTTCTGGTTTAAGACCATTACCACCAAGTATGTCAGAGTTTCTTCTTGGATCTGGTTTTGATAGATTGTTGGAACAGCTTTCACAGATTGAGATCAATGGTATTGGAAGATATGAACATCCACCAGCATCAAAAGCTTCTGTTGATTCATTACCAACTCTTGAAATTGATAATACTCATTTGGAGATGGAATCACATTGTGCTGTTTGTATGGAAGCTTTTGAGTTAGGTACTGTTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGACTGTATTTTACCTTGGCTTGCGCTGCATAATTCGTGTCCCGTTTGTCGACATGAGTTACCGACTGATTCTGATGCTGGAAATGGTAATCAATTGCAATCGCAATCGCAATTGCAATCGCGGTCCCAGGTGGAGTCGCAATCGGTTGGTTTGAATGAGGAAGAGAGTAATATTGGGTTGACTATATGGAGATTGCCTGGTGGTGGTTTTGCTGTGGGGAGATTTTCAGGTGGGAGGAGAGGTGCTGAGAGAGAGTTACCTGTTGTTTATACTGAAATGGATGGTGGGTTTAATAATGGGGGTGAACCTAGGAGGATTTCTTGGTCATCTAGAGGGAGTAGAGGAAGAGAAAGAGGTGGTGGTTTGAGAAGGTTTTTTGGGAGTTTCTTTGGTTGTTTTGGTGTTGGTGGTGGAGTTGGGAATCATAATCAACGGTCTGTTTCGGGTAGAGAGTTGAGGTCTGTGAGGACTAATTCGTCGCATTCTTCAAATATGGATCCCTCTCTGCGTTCTCGAAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTGA 1218 0.4507 MSETTSYWCYRCNRFIRLGRQETVVCPDCDGGFLEEIEQPPQVDSRRRRFPAAAMYMIGQRPNSDHNHNNNSRPPSSLRRTRRNGGDRSPFNPVIVLRGGGSTEAATEGGGGGGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKASVDSLPTLEIDNTHLEMESHCAVCMEAFELGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPTDSDAGNGNQLQSQSQLQSRSQVESQSVGLNEEESNIGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGRERGGGLRRFFGSFFGCFGVGGGVGNHNQRSVSGRELRSVRTNSSHSSNMDPSLRSRRTWSMDVNSGMRSW 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05440 405 Pfam Ring finger domain 194 236 IPR001841 -
Mepo3g05440 405 Pfam Protein of unknown function (DUF1117) 277 384 IPR010543 -
Mepo3g05440 405 SMART ring_2 195 235 IPR001841 -
Mepo3g05440 405 CDD RING-H2_RNF126-like 195 236 - -
Mepo3g05440 405 MobiDBLite consensus disorder prediction 62 79 - -
Mepo3g05440 405 SUPERFAMILY RING/U-box 176 242 - -
Mepo3g05440 405 MobiDBLite consensus disorder prediction 245 271 - -
Mepo3g05440 405 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Mepo3g05440 405 MobiDBLite consensus disorder prediction 59 118 - -
Mepo3g05440 405 FunFam E3 ubiquitin-protein ligase RING1-like 157 242 - -
Mepo3g05440 405 MobiDBLite consensus disorder prediction 360 393 - -
Mepo3g05440 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 242 IPR013083 -
Mepo3g05440 405 Pfam zinc-ribbon 5 37 IPR039525 GO:0061630
Mepo3g05440 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05440 Mepo-Chr3 68151351 68153452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05440 132 244 C3H Transcription Factor Family AT1G26800 41.593 5.26e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05440 K11982 - gmx:100807324 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05440 3 68151351 68153452 Mepo3g05440 3 68151351 68153452 ECH