Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05436 ATGCAACAAGCATCGCCTTCCACTTCTGTTGAGAAGACACGGGATTATTCAAATACGGTTGGGAACTCAAAAGCCTCTGATGATGAGCTCACTTGCAGTGTATGCCTGGAGCAAGTGAATGTTGGAGATGTACTTCGTAGCTTGCCCTTCCTGCATCAATTTCACGCTAGCTGCATTAATCCCTGGCTGTGGCAGCAAGGGACATGTCCTGCCTGCGAATTTCGAGCAGGATGTGGATGGAATGACAGTGGACATAACGATATTGCGGACATGGTTTGA 279 0.4803 MQQASPSTSVEKTRDYSNTVGNSKASDDELTCSVCLEQVNVGDVLRSLPFLHQFHASCINPWLWQQGTCPACEFRAGCGWNDSGHNDIADMV 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05436 92 SMART ring_2 32 72 IPR001841 -
Mepo3g05436 92 PANTHER TARGET OF ERK KINASE MPK-1 2 78 - -
Mepo3g05436 92 CDD RING-H2_PA-TM-RING 31 72 - -
Mepo3g05436 92 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Mepo3g05436 92 MobiDBLite consensus disorder prediction 1 28 - -
Mepo3g05436 92 Pfam Ring finger domain 31 72 IPR001841 -
Mepo3g05436 92 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Mepo3g05436 92 SUPERFAMILY RING/U-box 24 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05436 Mepo-Chr3 68116022 68116876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05436 2 92 C3H Transcription Factor Family AT3G55530 59.140 4.23e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05436 K16283 - gmx:100777936 154.836