Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05429 ATGAAAGTATCAATACTCTCTCTCTTATGCTTCTTCTCTTGTGTTCTATTAGTCCTTTGTCATGAAAATGAAATAAGTATTTTGAAAGTGCTTTTAGAGGTGAAATCATCTTTCACAGAAGACCCTGAAAATGTTCTTGGTAATTGGTCTGAAAACAACACTGATTACTGTACTTGGAGAGGTATTTCATGTGACTCGGTGAGTCGTGACGTAGTTAGACTCGTTCTGTCCAACTCGAAACTCAGCGGGTCAATTTCACCTTCACTCGGTCTTTTACAAAACCTAACTCACCTTGATCTTTCATCAAATCATCTTGTGGGTCCCATTCCACCTTCTCTCTCCAAACTCACTAAATTAGAATCTTTGCTTTTGTTCTCCAACCAACTTACAAGCCAAATTCCTGCTGAGTTTGGCTCGTTGGTGAATCTCCGATTTTTGCGACTCGGTGACAATCAACTCAGTGGTGAAATTCCTTTTTCATTAGGCAATCTTGTTAAACTTGTCACCCTTGGTTTAGGTTCATGCAAACTCAACGGTTCGATTCCGGGTCAACTCGGTCGACTCACTGAGTTAAAGGATCTTATTCTCCAAGACAACAAGTTAACCGGTTCTATTCCATCCGAGTTAGGCAACTGTTCAAGCCTCATCAACTTCACTGGAGCTGAAAACGAACTCAATGGAACAATCCCGACTCAACTGAGTCAACTCAAAAACCTTGAAGTTCTCAACCTTGCCAACAATTCCTTAACAGGTGAATTACCGAGTCAACTCAGTGAAATGAGTAAACTCCAATATCTCAATGTGATGGAAAACAAACTCGAGGGTCGCATTCCAATCTCTCTATATCAATTGAGTAACCTTGAAGATCTTTATTTGTCAATGAACAAATTCAGTGGAGGAATTCCAAAAGAGTTTACCAACATGTCTAGGTTACAATACTTAGTTCTTTCTGGTAACTCTTTATATGGAAATATTCCAAAAACTTTATGTTATAATGCAAAAAGTTTAGAGCATTTATTTATATCTAAGAGTGGACTTCATGGTGAAATTCCATCTGAGTTGAGTCAATGTAAATCGTTGAAGCAAATTGATTTATCAAACAATTATCTCAATGGAACAATACCTCTTGAGATTTATGGTTTGGTGAATTTAACTGATTTTTTGCTTCATAACAATAGTTTGGTTGGTTCAATTTCACCTTTCATAGGGAATTTGAGTAACATGCATACACTTGCACTGTATCATAACAAGTTGCATGGTGCTTTGCCTAAAGAGATTGGGAAGCTTGGAAAGTTGGAGATTTTGTTTCTATATGATAATCAGTTTTCTGGGGAGATACCTATGGAGATTGGTAATTGTTCAGAATTGCAAATGGTTGATTTCTTTGGTAACCATTTTGGTGGAAGAATTCCAATCACTATTGGAAGGTTGAAAGAGTTGAGTTTTCTTCATCTTAGGCAAAATGATCTTGTTGGTGAGATTCCAGCTACACTTGGGAATTGTCATAAACTGATTGTGTTGGATTTGGCTGATAATAACCTCTCTGGTGGAATTCCTGCGACGTTCGGGTACCTTAAAGATTTGAAGCAGTTCATGCTTTACAACAATTCTCTTGAAGGTGGTATTCCTCAGCAAATGGTGGATGTAGCAAATTTGACAAGAGTTAATCTTTCAAAGAATAGATTGAATGGAAGTTTGGCTCCATTGTGTAGCTCTAGAGATTTTCTTTCTTTTGATGTCACAGGTAATGCATTTGATGGTGAAATCCCTTCAAATTTGGGAAACTCTTTGTCTCTTAATAGGCTAAGATTAGGTGGTAACAAGTTTTCTGGTGAAATTCCAAGGACATTAGGAAAAATCACTGAATTGTCTTTGTTAGATCTCTCGGGAAATTCACTCATAGGACCAATACCAGGTGAACTATCTTTATGTAACAAACTTGCCTCTATTGATTTAAGCAATAACCTTCTTGTTGGTCATATACCATCATGGCTTGGAAATTTGCCTAAGTTAGGAAAGGTTAATCTTGCCTTCAATCAATTTTCTGGGCCTTTTCCATTAGGCCTATTCAGATTACCTATGTTGTTAGTTCTTTCCTTGAATAACAATTCTCTTGATGGAAGTCTCCCAGATGGTATCGGCGATCTTGAATCGCTTAATGTCTTAAGACTTGACCAGAATAATTTTAGTGGACCAATCCCTCATGCAATAGGTAATTTGAGAAATCTACATGAGCTCAATCTATCTAGAAATGTCTTTAGTGGTGACATACCAAATGAGGTTGGGAATCTTCAAAATCTCCAAGTCGCTTTAGACCTCAGTTACAATAATCTCTCTGGCCAGGTTCCATCTTCTCTTGGCACGTTGGCGAAATTGGAAGCGCTTGATCTATCTCACAATCAACTCACAGGAGAACTTCCTTCAAACATCTGTGAAATGATTAGCTTGGAAAAGTTGGATATCTCTTACAATAACTTTCAAGGCGCATTGAATAAGCGATTCTCCCGCTGGCCATACGAGGCGTTTGTAGGGAACCTTCGTCTTTGTGGAGCCTCTCTTCGTAGCTGCAACCATGGTGGTGCTTCCGGTAATAGGCTATCGAGGTTAAGTGAGAAATCAGTGATTATAATATCTGCCTTGTCAACTCTAGCTGCAATTGCACTACTTGTTCTTGCAGTGAAAATCTTCTTGAGAAATAGGCAAGAACTTCTGAAGAAAGACAGTGAATTGGAGTGTGTTTTCTCCTCCTCTTCGTCACAAGTGCAGAAACGGCCGTTGTTCCCTGTAAGTACAGGTGGACGGAGAGAATACAGGTGGCAAGAAATCATGGATGCTACAAACAATTTGAGTGATGAATTCATAATCGGTTCTGGAGGTTCCGGAACAGTCTACAGAGTTGAATTGCCTACCGGCGAGACTGTTGCTGTCAAGAAGATTTCATTGAAAGATGAATATCTGTTGCATAAAAGCTTTATAAGAGAAGTGAAGACTTTAGGGAGGATTAAGCATAGACATTTGGTGAAACTGGTTGGTTGTTGTAGCAATAGACACAAAGGAAATGGCTGCAATCTGTTGATATACGAGTTCATGGAAAATGGAAGTGTTTGGGATCGGTTACATGGAAGTGCTCTCAAGTTAAAGAAAAACCTTGATTGGGACACAAGGTTCAAAATTGCTTTGGGGTTAGCTCAAGGAATGGAGTACCTTCATCATATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAATATATTGTTAG 3270 0.3869 MKVSILSLLCFFSCVLLVLCHENEISILKVLLEVKSSFTEDPENVLGNWSENNTDYCTWRGISCDSVSRDVVRLVLSNSKLSGSISPSLGLLQNLTHLDLSSNHLVGPIPPSLSKLTKLESLLLFSNQLTSQIPAEFGSLVNLRFLRLGDNQLSGEIPFSLGNLVKLVTLGLGSCKLNGSIPGQLGRLTELKDLILQDNKLTGSIPSELGNCSSLINFTGAENELNGTIPTQLSQLKNLEVLNLANNSLTGELPSQLSEMSKLQYLNVMENKLEGRIPISLYQLSNLEDLYLSMNKFSGGIPKEFTNMSRLQYLVLSGNSLYGNIPKTLCYNAKSLEHLFISKSGLHGEIPSELSQCKSLKQIDLSNNYLNGTIPLEIYGLVNLTDFLLHNNSLVGSISPFIGNLSNMHTLALYHNKLHGALPKEIGKLGKLEILFLYDNQFSGEIPMEIGNCSELQMVDFFGNHFGGRIPITIGRLKELSFLHLRQNDLVGEIPATLGNCHKLIVLDLADNNLSGGIPATFGYLKDLKQFMLYNNSLEGGIPQQMVDVANLTRVNLSKNRLNGSLAPLCSSRDFLSFDVTGNAFDGEIPSNLGNSLSLNRLRLGGNKFSGEIPRTLGKITELSLLDLSGNSLIGPIPGELSLCNKLASIDLSNNLLVGHIPSWLGNLPKLGKVNLAFNQFSGPFPLGLFRLPMLLVLSLNNNSLDGSLPDGIGDLESLNVLRLDQNNFSGPIPHAIGNLRNLHELNLSRNVFSGDIPNEVGNLQNLQVALDLSYNNLSGQVPSSLGTLAKLEALDLSHNQLTGELPSNICEMISLEKLDISYNNFQGALNKRFSRWPYEAFVGNLRLCGASLRSCNHGGASGNRLSRLSEKSVIIISALSTLAAIALLVLAVKIFLRNRQELLKKDSELECVFSSSSSQVQKRPLFPVSTGGRREYRWQEIMDATNNLSDEFIIGSGGSGTVYRVELPTGETVAVKKISLKDEYLLHKSFIREVKTLGRIKHRHLVKLVGCCSNRHKGNGCNLLIYEFMENGSVWDRLHGSALKLKKNLDWDTRFKIALGLAQGMEYLHHMIVCQRSFTGTSNPAIYC 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 278 376 - -
Mepo3g05429 1089 SMART LRR_typ_2 236 260 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 740 764 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 308 332 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 188 212 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 284 307 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 381 405 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 692 716 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 140 164 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 789 813 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 116 139 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 477 501 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 429 453 IPR003591 -
Mepo3g05429 1089 SMART LRR_typ_2 92 115 IPR003591 -
Mepo3g05429 1089 ProSitePatterns Protein kinases ATP-binding region signature. 955 978 IPR017441 GO:0005524
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Mepo3g05429 1089 Pfam Leucine rich repeat 741 802 IPR001611 GO:0005515
Mepo3g05429 1089 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Mepo3g05429 1089 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 735 858 IPR032675 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 375 469 IPR032675 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 176 277 IPR032675 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 643 734 IPR032675 -
Mepo3g05429 1089 Pfam Protein tyrosine and serine/threonine kinase 954 1074 IPR001245 GO:0004672|GO:0006468
Mepo3g05429 1089 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515
Mepo3g05429 1089 Pfam Leucine Rich Repeat 238 258 IPR001611 GO:0005515
Mepo3g05429 1089 PRINTS Leucine-rich repeat signature 789 802 - -
Mepo3g05429 1089 PRINTS Leucine-rich repeat signature 360 373 - -
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 910 1029 - -
Mepo3g05429 1089 PANTHER UNNAMED PRODUCT 9 565 - -
Mepo3g05429 1089 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 470 571 IPR032675 -
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 183 - -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 572 642 IPR032675 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 278 374 IPR032675 -
Mepo3g05429 1089 SUPERFAMILY Protein kinase-like (PK-like) 925 1072 IPR011009 -
Mepo3g05429 1089 Gene3D Ribonuclease Inhibitor 28 175 IPR032675 -
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 568 859 - -
Mepo3g05429 1089 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 471 567 - -
Mepo3g05429 1089 Gene3D Transferase(Phosphotransferase) domain 1 932 1084 - -
Mepo3g05429 1089 SUPERFAMILY L domain-like 327 568 - -
Mepo3g05429 1089 ProSiteProfiles Protein kinase domain profile. 949 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo3g05429 1089 SUPERFAMILY L domain-like 571 849 - -
Mepo3g05429 1089 SMART tyrkin_6 949 1089 IPR020635 GO:0004713|GO:0006468
Mepo3g05429 1089 FunFam Uncharacterized protein 377 470 - -
Mepo3g05429 1089 SUPERFAMILY L domain-like 36 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05429 Mepo-Chr3 67967184 67970453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05429 304 878 Receptor kinase-like Gene Family AT5G56040 35.467 2.37e-81 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mepo3g05429 PK_Tyr_Ser-Thr 1.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05429 - - gmx:100797153 1416.36