Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05411 ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCGTGGGAAGGAGGACATCCCACCGACACAATTATTTTAGAAGCTGAAGAGCCGCAGACGCCGATAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCTGGCGTGCCGGAGCTGCGGCTTCAAGCCGCACGTGATATCAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGCTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTGCAGGCGTCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATCTATCAACATACCCTAATAATCTTAGCATCATTCTCGAAACAAATCCAATCCCTTACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCTTTGGTGGATTATGATGAATGCAGAACCGCATTGACATCCGAGGAAGGTGGAATTCTTGCGGTCGTGGAGGTTCTCGAAAACGGCACTCTCCAGAGTAGGGAACATGCCGTTGGAACACTATTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCGATCCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTTCAAGGAACACCGAAGTCTCAGACAAAATCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGACGGGGATGATCAGTCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTCGTATGCACCCCTAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA 1188 0.4579 MDTPHSPSSCSSSSSNYSWEGGHPTDTIILEAEEPQTPIAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSAESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSIILETNPIPYIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKSRTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05411 395 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Mepo3g05411 395 Gene3D - 27 377 IPR011989 -
Mepo3g05411 395 SMART arm_5 110 150 IPR000225 GO:0005515
Mepo3g05411 395 SMART arm_5 69 108 IPR000225 GO:0005515
Mepo3g05411 395 SMART arm_5 235 276 IPR000225 GO:0005515
Mepo3g05411 395 SMART arm_5 151 191 IPR000225 GO:0005515
Mepo3g05411 395 FunFam U-box domain-containing protein 4 25 377 - -
Mepo3g05411 395 Pfam Armadillo/beta-catenin-like repeat 111 149 IPR000225 GO:0005515
Mepo3g05411 395 Pfam Armadillo/beta-catenin-like repeat 154 190 IPR000225 GO:0005515
Mepo3g05411 395 PANTHER U BOX DOMAIN-CONTAINING 39 323 - -
Mepo3g05411 395 SUPERFAMILY ARM repeat 41 341 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05411 Mepo-Chr3 67730281 67734204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05411 41 318 U-box Gene Family AT2G23140 32.857 1.15e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05411 - - gmx:100809684 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05411 3 67730281 67734204 Mepo3g05411 3 67730281 67734204 ECH
Mepo3g05411 3 67730281 67734204 Mepo7g02133 7 31825685 31829174 PCT