Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05372 ATGAATTCTGATGATACGCACGATGCCAACGATGTTGAATCCCTCGATGACGATTTCTACGGTGGTGAAACCAAAGATTATCTCATGGATGACTACAGTGACTATGATGATGATAATAATAACAATGATGCTGCTGATGATTACGTTGATGGTGCTGATAATTCTGACGCTCAGATCACTGAGATAAATTTTTCCATATTGAAAGAATCAGATATCCGGGAACGGCAGGAAGATGATATCAGTAGTGTCGCATCAGTTCTTTCCATACCACCAGTTGCTGCAAGCATCCTACTTCGTCATTATAATTGGAATGTCAGTAATGTTAATGAAGCTTGGTTTGCTGATGAAGATGGAGTCCGAAGAAAAGTTGGTTTGTTGGAGAAGCCGGTTTATGAGAATCATGATGCTAAAAAGCTTACTTGCGGCATCTGTTTTGAAGCTTGCCGTCCTTCTAAGATTCACACTGCTTCTTGCGGTCATCCGTACTGTTTTTCATGCTGGGGAGGATATATTGGCACTTCAATCAACGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCGTCTGCTGAAGATAAGGAGAAGTATGATCGTTACCTTGTTAGATCTTACATTGAAAACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGCGGTGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGATGCTCACCGTCCAGTGGATTGCGACACAGTCTCGAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACACGAACTGGATACTTGCTTACACGAAGCCGTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCTTGGATGCATGCATATGACATGTACTCAACCTTGCAGATTTGAATTTTGCTGGCTATGCCTTGGATCATGGAGAGACCATCGCAATTGCAATGGTTATGGAACAGCTATACAAGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAAATCATTGGAGAAGTACACACATTATTATGAGCGGTGGGCTAGCAACAATTCTTCAAGGCAAAAAGCTATTGCTGATCTACACCAGATGCAAACTGTTCATATGGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCGCAGCTTAAGTTCATAACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTAGATGAGCATGAGCATGAGCATGCTAAAAAGCAGCTCTTTGAGTACTTGCAAGGTGTGGCAGAATCAGGTTTGGAGAGACTTCATCTATGCGCCGAAAAGGAACTCCAAGTATTCCTCAGTGTTGAAGCCCCGTCTGAAGAATTCAACGATTTTCGCTCAAAACTGGCTGGATTGACCCGTGTGACTAAAAACTTCTTCGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTGTTACAAGCAAAGCAACAAGTTCAGAAAATGTTGCAGGTAAGGGAAGAAGCGGAAGAGGAAATGGGACGAATCAAGCTACCTTGTCCAGCAGATTAACTTATGATAATGAGTGGTATTGTGAGCAATGTACCTATGCAAACGTTGGATCTGCCACTGAATGCGCCATGTGCAATGAGTGGTATTGTGGGCAATGTAGCTATGCAAACGTCGGATCTGCCACTGTATGCGCGATGTGCAATCAACAGCGTCAATGA 1812 0.4244 MNSDDTHDANDVESLDDDFYGGETKDYLMDDYSDYDDDNNNNDAADDYVDGADNSDAQITEINFSILKESDIRERQEDDISSVASVLSIPPVAASILLRHYNWNVSNVNEAWFADEDGVRRKVGLLEKPVYENHDAKKLTCGICFEACRPSKIHTASCGHPYCFSCWGGYIGTSINDGPGCLMLRCPDPACGAAVDQDMINLLASAEDKEKYDRYLVRSYIENNKKTKWCPAPGCEHAVNFDAGGENYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNSAESENTNWILAYTKPCPKCKRPIEKNLGCMHMTCTQPCRFEFCWLCLGSWRDHRNCNGYGTAIQDETEKRREMAKKSLEKYTHYYERWASNNSSRQKAIADLHQMQTVHMEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLDEHEHEHAKKQLFEYLQGVAESGLERLHLCAEKELQVFLSVEAPSEEFNDFRSKLAGLTRVTKNFFENLVRALENGLCDVDSNGAVTSKATSSENVAGKGRSGRGNGTNQATLSSRLTYDNEWYCEQCTYANVGSATECAMCNEWYCGQCSYANVGSATVCAMCNQQRQ 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05372 603 SUPERFAMILY RING/U-box 291 339 - -
Mepo3g05372 603 SMART ibrneu5 210 272 IPR002867 GO:0008270
Mepo3g05372 603 SMART ibrneu5 285 339 IPR002867 GO:0008270
Mepo3g05372 603 SMART zf_4 577 601 IPR001876 -
Mepo3g05372 603 SMART zf_4 555 576 IPR001876 -
Mepo3g05372 603 FunFam RBR-type E3 ubiquitin transferase 135 224 - -
Mepo3g05372 603 ProSiteProfiles Zinc finger RanBP2 type profile. 553 577 IPR001876 -
Mepo3g05372 603 Pfam Ariadne domain 348 512 IPR045840 -
Mepo3g05372 603 ProSiteProfiles Zinc finger RanBP2 type profile. 575 603 IPR001876 -
Mepo3g05372 603 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 427 IPR031127 GO:0004842|GO:0016567
Mepo3g05372 603 ProSiteProfiles TRIAD supradomain profile. 137 343 IPR044066 -
Mepo3g05372 603 FunFam RBR-type E3 ubiquitin transferase 273 514 - -
Mepo3g05372 603 SUPERFAMILY RING/U-box 210 279 - -
Mepo3g05372 603 MobiDBLite consensus disorder prediction 523 545 - -
Mepo3g05372 603 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 GO:0008270
Mepo3g05372 603 Pfam IBR domain, a half RING-finger domain 280 339 IPR002867 GO:0008270
Mepo3g05372 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 221 IPR013083 -
Mepo3g05372 603 ProSiteProfiles Zinc finger RING-type profile. 141 185 IPR001841 -
Mepo3g05372 603 CDD BRcat_RBR_ANKIB1 217 281 - -
Mepo3g05372 603 MobiDBLite consensus disorder prediction 1 23 - -
Mepo3g05372 603 SUPERFAMILY RING/U-box 137 222 - -
Mepo3g05372 603 ProSitePatterns Zinc finger RanBP2-type signature. 557 576 IPR001876 -
Mepo3g05372 603 ProSitePatterns Zinc finger RanBP2-type signature. 579 598 IPR001876 -
Mepo3g05372 603 Gene3D - 268 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05372 Mepo-Chr3 67217899 67220191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05372 16 576 ARIADNE family AT1G65430 62.045 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05372 K11968 - gmx:100810427 914.835