LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g05371	ATGATTAATCTTTTAGCATCTGCTGAAGATAAGGAGAAGTATGATCGTTACCTTGTTAGATCTTACATTGAAAACAATAAAAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCAGTTAATTTTGATGCTGGCGGTGAAAATTATGACGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAAGATGCTCACCGTCCAGTGGATTGCGACACAGTCTCGAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACACAAACTGGATACTTGCTTACACGAAGCCGTGTCCCAAGTGCAAGAGATCGATTGAAAAAGACCGTGGATGCATGCATATGACATGTACTGCACCTTGCAAATTTCAATTTTGCTGGCTATGCCTTGGTGATTGGTCAGACCATCGCAGTGCTTGCAATCATTTTGAAGACTCTGAAAAACAGGCGGTGTATGATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAAATCATTGGTGAAGTACACACATTATTATGAGCGGTGGGCTACCAATCAATCTTCAAGGAAAAAAGCTCTTGCTGATCTACACCAGATGCAAACTGTTCATATGGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCGCAGCTTAAGTTCATTACCGAGGCTTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTAGATGAGCATGAGCATGAGCATGCTAAAAAGCAGCTCTTTGAGTACTTGCAAGGAGTGGCAGAATCAGGTTTGGAGAGACTTCATCAATGCGCTGAAAAGGAACTCCAAGTATTCCTCAGTGCTGAAGGCCCGTCTAAAGAATTCAACGATTTTCGCTCAAAACTAGCTGGATTGACCAGGGTGACTAAAAACTTCTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAAGTGATGTGGATAGTAATGATGCTGCTACAAGCAAAGGAACGAGTTCAAAAAATGCTGCAGGGAGAAGTAAGGGAAGAGGAAAGGGGACAAATCGGGCTACCGTGTCCAGCAAAATAACCGTTGATAATGAGTGGTATTGTGAGCAATGTACCTATGCAAACGTCGGATCTGCCACTGCTTGCGCGATGTGCAGTGAGTGGTCTTGTGGGCAATGTACCTATGCAAACATCGGATCTGCCACTGCATGCGCGGTGTGCAATCAACAGCGTCAATGA	1230	0.4317	MINLLASAEDKEKYDRYLVRSYIENNKKTKWCPAPGCEHAVNFDAGGENYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNSAESENTNWILAYTKPCPKCKRSIEKDRGCMHMTCTAPCKFQFCWLCLGDWSDHRSACNHFEDSEKQAVYDETEKRREMAKKSLVKYTHYYERWATNQSSRKKALADLHQMQTVHMEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLDEHEHEHAKKQLFEYLQGVAESGLERLHQCAEKELQVFLSAEGPSKEFNDFRSKLAGLTRVTKNFFENLVRALENGLSDVDSNDAATSKGTSSKNAAGRSKGRGKGTNRATVSSKITVDNEWYCEQCTYANVGSATACAMCSEWSCGQCTYANIGSATACAVCNQQRQ	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g05371	409	Pfam	Ariadne domain	155	320	IPR045840	-
	Mepo3g05371	409	Gene3D	-	70	321	-	-
	Mepo3g05371	409	SUPERFAMILY	RING/U-box	93	144	-	-
	Mepo3g05371	409	MobiDBLite	consensus disorder prediction	323	339	-	-
	Mepo3g05371	409	ProSitePatterns	Zinc finger RanBP2-type signature.	385	404	IPR001876	-
	Mepo3g05371	409	SMART	zf_4	361	382	IPR001876	-
	Mepo3g05371	409	SMART	zf_4	383	407	IPR001876	-
	Mepo3g05371	409	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	10	234	IPR031127	GO:0004842\|GO:0016567
	Mepo3g05371	409	SUPERFAMILY	RING/U-box	12	81	-	-
	Mepo3g05371	409	FunFam	RBR-type E3 ubiquitin transferase	75	321	-	-
	Mepo3g05371	409	CDD	BRcat_RBR_ANKIB1	19	83	-	-
	Mepo3g05371	409	Pfam	IBR domain, a half RING-finger domain	12	74	IPR002867	GO:0008270
	Mepo3g05371	409	Pfam	IBR domain, a half RING-finger domain	82	139	IPR002867	GO:0008270
	Mepo3g05371	409	ProSiteProfiles	TRIAD supradomain profile.	1	146	IPR044066	-
	Mepo3g05371	409	SMART	ibrneu5	87	142	IPR002867	GO:0008270
	Mepo3g05371	409	SMART	ibrneu5	12	74	IPR002867	GO:0008270
	Mepo3g05371	409	ProSiteProfiles	Zinc finger RanBP2 type profile.	381	409	IPR001876	-
	Mepo3g05371	409	MobiDBLite	consensus disorder prediction	323	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g05371	Mepo-Chr3	67207264	67208856	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g05371	1	382	ARIADNE family	AT1G65430	67.526	0.0	544

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g05371	K11968		-	gmx:100810427	665.996