Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05362 ATGACGACTCGAATTGCTCCCGGTGTGGGTGCAAATCTGCTCGGCCAACATTCGGCGGAGAGAAACCAAGATGCCACTGCTTACGTCGGTAATCTCGACCCTCAGATTTCTGAGGAATTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCCGTTGTTAATGTGTATGTTCCTAAGGATAGAGTCACTAATCAACATCAAGGTTATGGATTTGTCGAATTCCGCAGCGAAGAAGATGCTGACTATGCTATTAAAGTACTTAACATGATTAAACTTTATGGAAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATCGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCCAAGATCATGAGAGATCCTGACACGGGGAATTCCCGAGGCTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGATACTAAAGGCGAAAGGCACGGTACTCCCGCAGAAAGAGTTTTGGCTGCAAGTAATCCGACGGCACAGAAGAGCAGGCCTCATACTTTATTTGCAAGTGGGCCACCATCACTTCCCAATGCTCCTCAGGCTAATGGTACCATTCCAGCTCCAGTGCCACCCCGCCCCTTCGCTAATGGTGTTGCCCCCCCTCCTATTCATGTCATCCAACCACCACCTCCACAAGCCCCAGCCTTTCAGCCTATGCAGATGCCACCACCTGGACAACAAGCATGGCATCAACAACAGCAAGGTCAACCAATGATGCAACAGGGAATGCCTCCTCCAATGCAACAGTTCAGGCCACCTCACTCGATGCAGATGCCGCCGCCACCTCACTCGATGCAGATGCCGCCGCCACCACCTCCACAAGGTATGCAGGGACCTCCAAGGCCTCTTCCACCGCCATCAGTAATGGCAGGCCAGCAACAAGTTTGGCGACCACCGCCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGAACTCAATGCCACCACCGCCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA 1167 0.4901 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQAWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPSG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05362 388 CDD RRM1_SF3B4 28 100 IPR034158 -
Mepo3g05362 388 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 380 - -
Mepo3g05362 388 MobiDBLite consensus disorder prediction 350 388 - -
Mepo3g05362 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Mepo3g05362 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Mepo3g05362 388 CDD RRM2_SF3B4 111 193 IPR034159 -
Mepo3g05362 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Mepo3g05362 388 Gene3D - 112 200 IPR012677 -
Mepo3g05362 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mepo3g05362 388 MobiDBLite consensus disorder prediction 208 236 - -
Mepo3g05362 388 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Mepo3g05362 388 SMART rrm1_1 113 187 IPR000504 GO:0003723
Mepo3g05362 388 SMART rrm1_1 26 99 IPR000504 GO:0003723
Mepo3g05362 388 MobiDBLite consensus disorder prediction 301 342 - -
Mepo3g05362 388 FunFam splicing factor 3B subunit 4 109 200 - -
Mepo3g05362 388 MobiDBLite consensus disorder prediction 193 388 - -
Mepo3g05362 388 MobiDBLite consensus disorder prediction 238 276 - -
Mepo3g05362 388 Gene3D - 16 111 IPR012677 -
Mepo3g05362 388 MobiDBLite consensus disorder prediction 279 298 - -
Mepo3g05362 388 FunFam Splicing factor 3b subunit 4 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05362 Mepo-Chr3 67083249 67089358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05362 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 3.94e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05362 K12831 - gmx:100791039 501.516