Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05334 ATGACAATGGAAGAAGTTTCTTTGGCTGGAACACTCCCTTTTGATAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAACAGAGGAAAGCCAAAACTCTGTCCTTTCAGACTTTCTCCTGATGAGAGAAATTTGATATGGTGCTCGGGGCAGCAGGAAAAGCATTTGCGATTGAGCGGAGTAACCAAAATTGTTCAAGGAGAGGGAAATATAAGGTCTCAGAGACAAAACGAAACCGAAAAGGAGTGCCATTCATTTTCACTGATCTATGCTAATGGTGAACACTCTCTTGATCTGATATGCAAAGACAAAGCACAAGCTGCTACTTGGTTTGTTGGATTGAAAGCTGTGATTTCTAGGTGCCAGCAACCAAAAGCTTTTAGCAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCCTCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGACACCTCTCAATTTACTCAGGTACATAGCGTATGCGCAAGTCCTACTTTGTCCCTTTCAGAACGGTGTTTTTCTGATGGCTTGTCATATAAATCTGACTTTTATTCATCGGCATCGTCCCTCTCCAGCATTCATGGCATAACAGACAACTCAGTCCCAAGTTCTCCATATATTAATCCAGATATTCATAGCAATATCAAAACATCTCGTTTCGAAAAAGAGTACAAGAAGGAATTGTCATCAAATAGATCTATCATGCCTCCTGCCTCCGCACTAGCAGGAAACAATGTATTGAAGGATGTCATGATATGGGGGGGTGGAATTGGTTGCCTTGTTGGGATTGTAAATGAAAGGTTTGTTCAAAATAGTATTTATTCTTTAGTTCCCAAATTACTCGAATCCACCGCCATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCTGCAATAGTTACGAAACAAGGGGAAGTTTACTGCTGGGGTCAAGGGAAGTGTGGAAGGTTAGGGCAAAGAATTGATATGGATATTAGCTCCCCGAAAATAGTTGATTCTCTGAGTGATATTCGTGTAAAAAACGTTGCTTGTGGCGAGTATCATACATGTGCTTTGACAGATTCTGGCGAAGTATATGCGTGGGGGAATGACGTTTCTTGTTCAGATTTGGTTGATGAAGGGAGAATTAGAAGTCAGTGGTTAACACATAAACTTTCTTTACCAGTAGAAGGTATTAGTATTTCCAGTGTTGCTTGTGGTGAATGGCATACTGCAATTGTCTCCAGTTGCGGTCGGTTATTTACGTATGGAGATGGTACATTCGGAGTACTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTCTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCAGCAATTATTGAAGTCTCCACCGAACGCTTTAAGTACAATACTTCGACTGGTAAGCTGTTTACATGGGGTGATGCAGATGAAGGGAGGCTTGGTCATGTTGATAATGTAAACAAGCTTGTACCGACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGATGACATTAGCACTTACTAACATGGGAAAAGTTTTTGCAATGGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGACAGAGCAGTTGTGGTTGAAGGAATGCTTAAACAAGAGTATGTTAAAATGATATCTTGTGGTTCATATCACGTTGCTGTTTTGACATCTTCAGGGAGTGTCTACACGTGGGGCAAAGGTGAAAATGGAGAACTAGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTTTGTTGAGGCTTTAAGAGATAGGCAGGTAGATACAATAGCATGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCACAAACCTATTTCAATTAGTGACCAATCAAGTTGTAATGGTTGTAGGTTACCGTTTGGCTTCACAAGGAAGAAACACAACTGTTATAATTGTGGTCTTTTGTTTTGCCGCAGTTGTAGTAGCAAAAAAGTTATGAACGCGTCTCTAGCCCCGGTTAAGAGCAAGGCCTTTCGCGTTTGTGATTCGTGCTTCAATAAAAAGCAAGGAAGTAGTGAACGTTCAGCTATGGACTCGTCAAAATCTCGAAATTACAACCATCAGAAGATACAAAGGCATCATCAGAACATGACTGGTGATGTCACTGAAGATAGAGGCGAAACAAATGTGACAAATGGTCCTCTGTTGTCTCCTAGTCAAACGTGTTACCAGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAATCCAACAAGAAAGCCAGCAGGATTTAGAAGACAGTTCCTCTAAGTTTGGTAGTGTGATACAATGTGGACAAGGACAAGTACCATATTCAGCACAATTTAGAATCAATTGTACAGAAAATTCAGTTGTGCACGAGACAGATACAACAAAGTCTGATAAGTTGCTCATGGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTCAAAAACCAAGAAATACAAGAGTGTCAACAAAAAGTCGAGGAGAGTTGGTCTGTTGCCAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACGATCTCAGGAAAAGATAATCATGGCCTAGAACAAAAGGGTGGACTACAAGAATTTCTTCCAAATCTGGCACCTATACATACTGATATGAATAGTCCAAGAAACGCCAACACGGACAGTCAATCAAATTCCCCTATAATATTCTCTAGTGCGTTAAAATCCAAATTTGGGAGAAGTATTCTTCTTAAAAAGGACAACAATCTCACTAAAGCAGAATCTCAACAAGAGAATGCATTGAAGGTTGAATGGGTTGAACAATATGAGAATGGCGTTTACATAACATTGACAAAGTCGTCGAGTGGAGAAAAAGGTCTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAGGTGGTGGGAAGAGAATCAAACAAAAGTGCATCATAAATATGAAATTGAAACTAGGTGA 3111 0.4053 MTMEEVSLAGTLPFDRAVEQAIVSIKKGAYLLKCGNRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGEGNIRSQRQNETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSYKSDFYSSASSLSSIHGITDNSVPSSPYINPDIHSNIKTSRFEKEYKKELSSNRSIMPPASALAGNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDSLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSDLVDEGRIRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVSTERFKYNTSTGKLFTWGDADEGRLGHVDNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVVVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTIACGPSFTVAICLHKPISISDQSSCNGCRLPFGFTRKKHNCYNCGLLFCRSCSSKKVMNASLAPVKSKAFRVCDSCFNKKQGSSERSAMDSSKSRNYNHQKIQRHHQNMTGDVTEDRGETNVTNGPLLSPSQTCYQKNMPSGRKVWKIQQESQQDLEDSSSKFGSVIQCGQGQVPYSAQFRINCTENSVVHETDTTKSDKLLMEEVQRLRAEAKRLEKQCELKNQEIQECQQKVEESWSVAKEEAAKCKAAKEVIKALALRLHTISGKDNHGLEQKGGLQEFLPNLAPIHTDMNSPRNANTDSQSNSPIIFSSALKSKFGRSILLKKDNNLTKAESQQENALKVEWVEQYENGVYITLTKSSSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEIETR 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05334 1036 Pfam Transcription factor regulating root and shoot growth via Pin3 977 1031 IPR013591 -
Mepo3g05334 1036 ProSiteProfiles BRX domain profile. 977 1032 IPR013591 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 322 IPR000408 -
Mepo3g05334 1036 CDD PH_PLC_plant-like 16 128 - -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 493 541 IPR000408 -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 595 644 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Mepo3g05334 1036 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Mepo3g05334 1036 Gene3D - 390 653 IPR009091 -
Mepo3g05334 1036 SUPERFAMILY FYVE/PHD zinc finger 653 719 IPR011011 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Mepo3g05334 1036 Gene3D - 17 134 IPR011993 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Mepo3g05334 1036 MobiDBLite consensus disorder prediction 737 766 - -
Mepo3g05334 1036 SUPERFAMILY PH domain-like 17 127 - -
Mepo3g05334 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Mepo3g05334 1036 Coils Coil 832 866 - -
Mepo3g05334 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Mepo3g05334 1036 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Mepo3g05334 1036 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Mepo3g05334 1036 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Mepo3g05334 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 358 383 - -
Mepo3g05334 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 309 334 - -
Mepo3g05334 1036 CDD FYVE_like_SF 657 710 - -
Mepo3g05334 1036 MobiDBLite consensus disorder prediction 747 766 - -
Mepo3g05334 1036 Pfam Pleckstrin homology domain 19 125 IPR001849 -
Mepo3g05334 1036 Gene3D - 238 388 IPR009091 -
Mepo3g05334 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 896 - -
Mepo3g05334 1036 SMART fyve_4 646 715 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05334 Mepo-Chr3 66744136 66749468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05334 978 1034 Major Intrinsic Protein MIP AT1G31880 43.860 3.55e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05334 - - gmx:100794953 1591.63