Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05333 ATGTCTCAACCTTGTGTGTTAATCTCTATTTACATTATTACCATGCAACTAACTATTCTATTTTCACCATCCACTTCTCATTACTCTTCTCCATCACCACCAGCCACACCATTCAATGAATCTCCCCCTACATCTCCCTCTTCCACCTACTCCGAATGGCTCTCCGCCCACGCCACTTACTACTCCGTCTCTGATGACACCAGAGACGGAGTAGATGGGGCGTGTGGCTACGGTGACACTCACAGAGACGGTTATGGCATCACTGGTGCTGCTGCTCTCAGTGAGACTCTCTTTGTGCGTGGTCAGATCTGTGGTGGGTGCTTTGAACTACGGTGTCTTGAGGAGGATGTTCCGTTTGATAAGCGGTGGTGTGTTTTGGGTAGTTCTGTTGTTGTTACTGCTACGAGTTTTTGTGCTCCGAATTATGGATTTGATGCTGAGAGTGATGGTGGATATTGTAATCCTCCTAAGCAGCATTTTGTGCTTCCGGTTGAAGCTTTTGAGAAGATTGCTATTTGGAGAGGGGGTAACATGCCTGTGCAGTATCGCAGGATAAAGTGCATAAGAGAAGGGGGAATGAGGTTTACAATTACTGGCTCTGGCATCTTCAATTCAGTGCTGATCAGTAACGTAGCTGGTATAGGAGACATTGTTGGTGTGAAAGTTAAGGGTTCAAGAACTGGTTGGATTCCTATGGGTAGGAATTGGGGCCAAATCTGGCATGTAAATGCGTTACTACAAAACCAACCTCTTTCATTTGAGGTCACTAGTAGTGATGGTGTGACTATTACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTCAAGTCTTAG 861 0.4518 MSQPCVLISIYIITMQLTILFSPSTSHYSSPSPPATPFNESPPTSPSSTYSEWLSAHATYYSVSDDTRDGVDGACGYGDTHRDGYGITGAAALSETLFVRGQICGGCFELRCLEEDVPFDKRWCVLGSSVVVTATSFCAPNYGFDAESDGGYCNPPKQHFVLPVEAFEKIAIWRGGNMPVQYRRIKCIREGGMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSRTGWIPMGRNWGQIWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFEGKQFKS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Mepo3g05333 286 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Mepo3g05333 286 CDD DPBB_EXPA_N 52 187 - -
Mepo3g05333 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 192 IPR007112 -
Mepo3g05333 286 Gene3D - 193 284 IPR036749 -
Mepo3g05333 286 Gene3D - 39 187 IPR036908 -
Mepo3g05333 286 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 150 167 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Mepo3g05333 286 PRINTS Expansin signature 167 180 IPR002963 GO:0009664
Mepo3g05333 286 Pfam Lytic transglycolase 91 182 IPR009009 -
Mepo3g05333 286 SUPERFAMILY PHL pollen allergen 189 281 IPR036749 -
Mepo3g05333 286 MobiDBLite consensus disorder prediction 31 50 - -
Mepo3g05333 286 SUPERFAMILY Barwin-like endoglucanases 50 210 IPR036908 -
Mepo3g05333 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 281 IPR007117 -
Mepo3g05333 286 SMART dpbb_1 90 182 IPR007112 -
Mepo3g05333 286 Pfam Expansin C-terminal domain 193 270 IPR007117 -
Mepo3g05333 286 PANTHER EXPANSIN-A15 25 284 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05333 Mepo-Chr3 66722201 66724170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05333 52 286 Expansin Gene Family AT3G03220 68.085 8.39e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05333 - - mtr:11406100 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05333 3 66722201 66724170 Mepo3g05333 3 66722201 66724170 ECH
Mepo3g05333 3 66722201 66724170 Mepo7g02051 7 30832443 30835892 PCT