Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05300 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGAGGAGGGGAGAAGAAATGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCTTAGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTGTCTGCTACAACTAACCGAGAAATCGATGGACAAATACCAAATTACCCTAGTTTACCACCTCAGTTGGTTTGTCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTACAGCCGTTGACTCCGGAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAACTATTTTTGCAAGACTTTGACAGCTAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGCGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCGCAGCAACCACCAGCACAAGAACTAATTGCTAGAGATCTCCATGATGTTGAATGGAAGTTTCGACATATTTTTCGGGGACAGCCTAAACGACACCTTCTTACAACAGGCTGGAGCATATTTGTCAGTGCTAAGAGACTTGTAGCTGGAGATTCCGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGACCGCAAACTGTAATGCCATCATCTGTTCTGTCCAGTGACAGTATGCACATTGGACTTCTTGCAGCCGCTGCTCATGCTTCAGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCCGTGTACCATACACGTATTTCTGTTGGTATGCGCTTCAGGATGCTCTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTACATGGGCACAATAACAGGCATAAGTGATCTGGATGCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGATGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTGTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCGTCATTGTTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTGCTTGATGGTAGAGACGAAGCAACAAATGCCCTAATGTGGATGAGAGGTGGACCTGCAGACCAAGGTCTCAATTCCCTAAACTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTCGATCCAACTTTACTCGGGAATGATCAGAATCAACAATACCAAGCCATGTTGGCAGCAGCTGGAATGCAGAACATGGGTAGTGGGTATCTCATGAGGCCACAAATGGTGAATTTTCAACAACAGCCTACCCATTACCTTCAATCAGGAAACACTAATTCACCTTTGCAACTTCACCAGCCACAATCAATTCAACAATCGGTGTCCTCTAATATGATGCAGCCACAACAAACCCAAGTACTTACAGAAAACCTGTCTCAGCACCTTCTTCAGAAACCAAATAATAATCAAGAACTCCAAGCTCAACAACAGCAACATGCATATCAAGATACACTTCTTGTTCAAAATGATCAGCTCCATCAGAGACAACAACAATCCAATGTGCCGTCACCATCATATTCAAAACCAGATTTCCTGGATTCAAATATTAAGTTTCCTGCTTCAGTTCCCTCGGGACAAAACATGCTTGGTTCGCTTTGCGCTGAAGGAACTGGCAATCTCTTGAATCTATCGAGTCTGACGAGAAGTGGTCAGTCATTGATGAATGAACAATTACCACAACAATCATGGACTCCAAAGTATGGAAATATGCAGGTCAATGCCTTTGGCAGCGCAATGTCACATGCACAATATTCTGGAAAAGATTCAGCTATAGTGCCTCCACATTGTGATTCAGATGCCCAAAATCATACTCTCTCGGGTGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTCCCGAATTACACTGCTTCAACATCGGACACTGGTGCATCAACACAATTAGGGGAGTCTGGATTCCAGGGTTCTCTATATGCCTGCATGCAAGATTCATCTTCATTTTTGCAAAATGCAGAGCAAATCGACCCACAAAACCAGAACCCAACATTTGTAAAGGTTTACAAATCGGGATCGGTTGGGCGTTCACTTGACATCTCTCGGTTCAGCTGCTATCGCGAGCTGCGAGAGGAGTTGGGTCAAATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACCGGGAGAATGATGTGCTTCTCCTTGGCGACGATCCGTGGGAATCATTCGTGAATAACGTTTGGTATATCAAAATACTTTCACCGGAAGATATTCAGAAGATGGGAGATCAAGCGGTAGAAATGCATGGACTAGGCTCAGGACAAAGGCTTAATGGCACTGGTGAATCTCACCACATTGTTTCTGGACAACCACCATCAATTGGCTCACTTGATTACTGA 2553 0.4512 MKLSTSGLGQQGHEGGGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLVCQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHASATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLLDGRDEATNALMWMRGGPADQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAAGMQNMGSGYLMRPQMVNFQQQPTHYLQSGNTNSPLQLHQPQSIQQSVSSNMMQPQQTQVLTENLSQHLLQKPNNNQELQAQQQQHAYQDTLLVQNDQLHQRQQQSNVPSPSYSKPDFLDSNIKFPASVPSGQNMLGSLCAEGTGNLLNLSSLTRSGQSLMNEQLPQQSWTPKYGNMQVNAFGSAMSHAQYSGKDSAIVPPHCDSDAQNHTLSGVNIDSSGLLLPTTVPNYTASTSDTGASTQLGESGFQGSLYACMQDSSSFLQNAEQIDPQNQNPTFVKVYKSGSVGRSLDISRFSCYRELREELGQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGDQAVEMHGLGSGQRLNGTGESHHIVSGQPPSIGSLDY 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05300 850 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Mepo3g05300 850 Gene3D - 294 366 - -
Mepo3g05300 850 FunFam Auxin response factor 294 366 - -
Mepo3g05300 850 FunFam Auxin response factor 719 813 - -
Mepo3g05300 850 SUPERFAMILY CAD & PB1 domains 721 798 - -
Mepo3g05300 850 Pfam AUX/IAA family 715 808 IPR033389 -
Mepo3g05300 850 FunFam Auxin response factor 128 232 - -
Mepo3g05300 850 CDD B3_DNA 129 230 IPR003340 GO:0003677
Mepo3g05300 850 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Mepo3g05300 850 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo3g05300 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 813 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo3g05300 850 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
Mepo3g05300 850 ProSiteProfiles PB1 domain profile. 724 808 IPR000270 GO:0005515
Mepo3g05300 850 MobiDBLite consensus disorder prediction 472 505 - -
Mepo3g05300 850 Gene3D - 128 231 IPR015300 -
Mepo3g05300 850 SMART B3_2 130 232 IPR003340 GO:0003677
Mepo3g05300 850 Gene3D - 720 813 - -
Mepo3g05300 850 MobiDBLite consensus disorder prediction 830 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05300 Mepo-Chr3 66371802 66379618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05300 100 825 B3 DNA Binding Superfamily AT5G37020 67.663 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo3g05300 AUX_IAA 2.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05300 - - gmx:100784373 1454.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05300 3 66371802 66379618 Mepo3g05300 3 66371802 66379618 ECH
Mepo3g05300 3 66371802 66379618 Mepo7g02021 7 30438225 30448208 PCT