Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05244 ATGACCGTACAATCTACCGTAAAGCTTCAAAACCCTTCAAGCTCAAATTTTGAACCCGACCCATCATGCAAAACCACCACAAAAACCAAACCCAACAACAAAAAGCTTCTCCGGGTCATTTTCACCGACCACAACGCAACCGATTCAGAATCCTCCGGCGACGATGAAACCCCACGAAGAGTGAAGAGAGAAATCACTAACATCACCATGCACTTTCCTTCTCTCTTTGATTCTCCAACAACTTCACCTTCTTCTTCATCTTGCTCTATTAACCCGACCCGTTTCAATATACCCAGAAAACGACCCACAAAAAACTCCGGCGGTTCTAGCCGCCGGAGCATATTCCGTGGTGTTCGCAAAAGACCTTCGGGTCGGTGGATATCGGAGATCCGTGACCCGTTTCAAAGAAAACGTCTCTGGCTCGGAACTTTCAACACGGAGGAGGAAGCCGCCGCTGTTTACGACGCCGCCGCCGTGAAGATCTATGGTCCAAAAGTCGCCGAGGTAAACTTTCCAAACGATGCCACCATCAAGAAAAGCGTTAAAGTTTCGCCGGAGATTTTCTCCGGCGACGGTTTTGCTTCTCCGACGTCCGTTCTACCTTTCTGCGACGGCGAGACGCCGTTTGACGGTTTACGTTACGGAGCTGTGGATGCCTTTGGGTTTGACATTGACGCGCCGTTAAATTTAACGGACGTTAACTTTGTGCCGTTCGAGAAAGAAAAAGAAGAGTTTGGTGAGTTTGACTTGGACGAGTTCTTGACATGGCCAAGTTAA 777 0.4865 MTVQSTVKLQNPSSSNFEPDPSCKTTTKTKPNNKKLLRVIFTDHNATDSESSGDDETPRRVKREITNITMHFPSLFDSPTTSPSSSSCSINPTRFNIPRKRPTKNSGGSSRRSIFRGVRKRPSGRWISEIRDPFQRKRLWLGTFNTEEEAAAVYDAAAVKIYGPKVAEVNFPNDATIKKSVKVSPEIFSGDGFASPTSVLPFCDGETPFDGLRYGAVDAFGFDIDAPLNLTDVNFVPFEKEKEEFGEFDLDEFLTWPS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05244 258 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 MobiDBLite consensus disorder prediction 73 115 - -
Mepo3g05244 258 CDD AP2 113 174 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 Pfam AP2 domain 115 163 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Mepo3g05244 258 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 MobiDBLite consensus disorder prediction 1 32 - -
Mepo3g05244 258 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
Mepo3g05244 258 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mepo3g05244 258 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 178 - -
Mepo3g05244 258 MobiDBLite consensus disorder prediction 73 112 - -
Mepo3g05244 258 PIRSF PTI6 1 258 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05244 Mepo-Chr3 65695170 65696961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05244 32 212 AP2-EREBP Transcription Factor Family AT4G27950 39.698 4.16e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g05244 AP2 2.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05244 K13434 - gmx:102660028 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05244 3 65695170 65696961 Mepo3g05244 3 65695170 65696961 ECH
Mepo3g05244 3 65695170 65696961 Mepo7g01979 7 30018177 30020064 PCT