LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g05234	ATGTCGTATGTTCCTCCTCACTTGAGAAACGTGGCGAGTTCAACCACCGTGTCCACCACCACCGGAACCCTAGACAACCACCACCACCACCACCATCACAACAACAACAACAGCCTCGCATTTTCAAACTCACATTCCAACACTTCTTCTCTTTTCAATGCTTCTCGTCGGACCTCCGCTGCTCCGAGGACTATCGCCGCCGTTCCTGATACTGTCTTCCCTAAATGGCAACCTTCTGAACGCGTTTCTCGCATGAACCCTGACCAGATTGAAGAGGTCCGCCATCGGCTAAATCTTGATGTTACTGTTTCGTCTGACTCTCCTGCTGCACCTGCACCTATAGAATCGTTTAATGATATGTGTTTGCATCCAAGTATCATGAAGGACATTGCTTTTCATGATTACACCAGACCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGCGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCGATTCGGCGCGGAGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGATCTCTCGAGTCATTTAAAACTGCCATAGTCGTCGGTGGAACTAACATCGAAAAGCAGAGGTCTGAACTAAGAGCGGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGGTTCATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTATGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCGCAGATAAGAGAGATAATGAGAAGTCTTCCCGAGAAGCATCAAACACTACTGTTCAGTGCAACTATGCCTGTGGAGATCGAAGCATTATCAAAGGAGTACTTAGCTAGCCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCGTTGACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTAATTGCTCAAGGATTATCTGCAGTTTCTCTGCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTAGCTCAACCAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGCTTGGATGTCACAGGAGTGTCACACGTCATCAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGAATTGGAAGGACAGGGCGTGCAGGATCAACTGGCATAGCCACCTCCTTTTATACTGATCGTGACATGTTTCTTGTGTCAAATATAAGGAAAGCCATAGCTGATGCTGAATCTGGGAACGCTGTGGCATTTGCTACTGGGAAGGTTGCCAGAAGAAAGGAGAAAGAAGCAGCAGCTGCACACAAAGAGGCAAACATTGCTTTATCGAAACACCTTGGACCGGGAGCTGCTTCAATTAACATAGAAGACAAGTATAGATTCATGATTGCTGCCTCAAACAGTAAAGGAGAGGGCACGGCTGATAGTGCATGGGATGATTGA	1683	0.4629	MSYVPPHLRNVASSTTVSTTTGTLDNHHHHHHHNNNNSLAFSNSHSNTSSLFNASRRTSAAPRTIAAVPDTVFPKWQPSERVSRMNPDQIEEVRHRLNLDVTVSSDSPAAPAPIESFNDMCLHPSIMKDIAFHDYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESFKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALSKEYLASPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALIAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVSNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIALSKHLGPGAASINIEDKYRFMIAASNSKGEGTADSAWDD	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g05234	560	CDD	DEADc	126	323	-	-
	Mepo3g05234	560	Pfam	Helicase conserved C-terminal domain	346	463	IPR001650	-
	Mepo3g05234	560	CDD	SF2_C_DEAD	334	472	-	-
	Mepo3g05234	560	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	268	276	IPR000629	-
	Mepo3g05234	560	Gene3D	-	75	326	IPR027417	-
	Mepo3g05234	560	MobiDBLite	consensus disorder prediction	1	66	-	-
	Mepo3g05234	560	FunFam	probable ATP-dependent RNA helicase DDX17	75	325	-	-
	Mepo3g05234	560	SMART	ultradead3	134	337	IPR014001	-
	Mepo3g05234	560	SMART	helicmild6	382	463	IPR001650	-
	Mepo3g05234	560	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	84	515	-	-
	Mepo3g05234	560	MobiDBLite	consensus disorder prediction	36	60	-	-
	Mepo3g05234	560	MobiDBLite	consensus disorder prediction	7	23	-	-
	Mepo3g05234	560	Pfam	DEAD/DEAH box helicase	139	309	IPR011545	GO:0003676\|GO:0005524
	Mepo3g05234	560	Gene3D	-	328	521	IPR027417	-
	Mepo3g05234	560	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	146	322	IPR014001	-
	Mepo3g05234	560	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	483	IPR027417	-
	Mepo3g05234	560	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	115	143	IPR014014	GO:0003724
	Mepo3g05234	560	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	504	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g05234	Mepo-Chr3	65537805	65547535	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g05234	115	485	Eukaryotic Initiation Factors Gene Family	AT1G72730	35.467	6.33e-70	229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g05234	K12823		-	gmx:100818387	903.664