Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05230 ATGGGTTCTGACATTGGTATGGTGAATGGTTCGTGTGTTCATGAATGGAAGAAAGGGTGGGGTTTACGATCTGGTGGATTTGCTCAACTTTGCTTCAAGTGCGGATTTATGGAGGAATGGAAGAGTGGCAACCTTGACACATTATCTCCCTTTGAGAGTTCAGTTTTTTGTAATAAATTCCATCGTCAACAAACTGGTTGGCGACAGTGTAACATTTGCAACAAGCCTATCCACTGTGGATGCGTAGTATCTAGATCTTTGTTTGAGTATCTTGACTTCGGCGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCAACTAAATACGATTCGTAATACTGAAAATCCTAAATGGCCCGTTTCATCGACCCAAAATAATGCAAGGGATATTCATTCTGCTCATTTTGACAGCGGATTGTTTATGAGTAATGTTGATGAAGGAAAGCTTATGCAATTATGCAGAGTTGTTGAAGCTAGTGAATCTATCCATATGAATCATGCTCCGATAGACAACGTGATTACATCCAATGGGAAAAACAATCAAGTAGTTAGGCCTTCATTCAGGGAAGGCGATACTGGATTTTCAAATGCGATTAAGCCGCCTGTTCAGTCATTAACTTTTGCCACATTAGAAAATAATAGACCAACATGGGAGATAAAAAACTTGCATGAATCAAATGTGAGGCCCTCTTTGAATATGTGTTTGGGAAACCCGTCAGGGAACAACTCTTTCCCACCATCTGGTGGAGAGACTACAGACGGAAGACTTGATGGAAAAGTATCTCCTCCCTTTCATCAAGGGCCGAGATCTCGCCCTATATTGCCCAAACTGTTAAAGACTGGCCTTACCATGAATATAGAAACTGAAAAAGGGACACTTTCTCAACCACGTATTGCCCGGCCTCCTGGTGATGGGAGGGGTAAGAATCAGTTACTTCCTAGATATTGGCCTAGGATTACGGACCAGGAGCTGGAACGTTTGTCTGGAGATTTGAAGTCCACAGTAGTGCCATTGTTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGGATTGGTCGTCTTGTTCTCCCTAAAGCTTGTGCTGAGGCATATTTTCCTCATATTTCACACTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGTAATGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAATAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGGATTTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGATCCTGGGGGAAAACTTGTTATGGGTTTCAGAAAGTCATCAAATTCCGCAGATACACAGGATGCTTCTACATCTGCACATTCTAATGGCGGTTCTGCAAAGGGAGACACCTTTTCTGGTGGAAATGAGAATATTCCATCTGGAAGTAATTGTGCCGATCTTCTCCGTTCACCAAATGGTAACGGGGAACTTCGCTTAAATGGACATCCCGAACCTTCACATTTTGTTACTGGAGCTGCTGGTTTGCTTAAAGCCGAAAATGGCGAGATGACTAGCAATAATTCACTGGACCAAAAAAATTCAGCTTTAGAGAAGAAGAGGACTCGAAATATTGGCCTTAAAAGTAAGAGATTGCTTATTGGTAATGATGATTCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGATTTGCTTCGTCCACCACCCAGTGTCAAGCCAAGCATTGTCACAATCGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTTGGAAAGAGAACAATATTCAGCGCATCTTCATCTGGGGCGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGCTACCGGTTGATGCTCTTCTTCCTCCCAAGTGGGCATGTTCTGAAAATGTCTGGGATACAAGCAGATCTTCATGTTCCGCACCGGACGAGCTGAGCTCAAGGGAATTAGAAAATCTTTTGAAATCCAGCAAAGATTTTAAGAAGCGACGGATTGTAGAAAACAGCAAGTTGATCCAAGAACACGAGCCTTCTGGCTTAGATGCTCTCGCCAGTTTAGCTGTTTTAGGAGAAAATCTCTTGGGCCCTGCTGATTCCTCAGCTGGAGCCACCACTAAACATCCTAGACACCGTCCAGGCTGCTCTTGTATTGTGTGCATTCAGCCACCAAGCGGAAAAGGGAGACACAAGCCAACATGTACTTGCAACGTGTGTACGACAGTGAAGCGTCGGTTCAAAACCCTTATGCTACGCAAGAAGAAACGCCAATCAGAGCGTGAAGCAGATGCTGCCGCCAAAAAAGAACACATTCACAACAGAGTTGACGAGTCAGATACCAATGGTGGAGCATCAAGAGAAACCGTGAATCCTTTGGAAAATGAAGGACTAAATAGAGGTCAAGTCGAGGTTGGCGAGTCCAGCGCTGGGAAAATAGATCTAAATTGTCATCCCAATCGCGATGACTCGCAAGTGGATAATATCGCAAAACTCAGTGATCATATATGGGAACATATTAATATGAACCAAAATGGCGGTCCAAGAACCGTTAATACTGAAATGCAGGAAGTTCAACATTCTTCTTTGGCCACTCAATCTAATGGTGAAGATACGAGATACTTGTCTGATGAAAGATGCATCGCATCCACCGTTGGGAACAAAGAAAAAAGAGATGAGGTATTAAATCATTCAAATGAAAGTGAAAAGAATCTGTCTTGA 2733 0.4321 MGSDIGMVNGSCVHEWKKGWGLRSGGFAQLCFKCGFMEEWKSGNLDTLSPFESSVFCNKFHRQQTGWRQCNICNKPIHCGCVVSRSLFEYLDFGGIGCVSCVNTSQLNTIRNTENPKWPVSSTQNNARDIHSAHFDSGLFMSNVDEGKLMQLCRVVEASESIHMNHAPIDNVITSNGKNNQVVRPSFREGDTGFSNAIKPPVQSLTFATLENNRPTWEIKNLHESNVRPSLNMCLGNPSGNNSFPPSGGETTDGRLDGKVSPPFHQGPRSRPILPKLLKTGLTMNIETEKGTLSQPRIARPPGDGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISHSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMDLRAGDTVTFSRIDPGGKLVMGFRKSSNSADTQDASTSAHSNGGSAKGDTFSGGNENIPSGSNCADLLRSPNGNGELRLNGHPEPSHFVTGAAGLLKAENGEMTSNNSLDQKNSALEKKRTRNIGLKSKRLLIGNDDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSASSSGAKEQWAQCDDCSKWRKLPVDALLPPKWACSENVWDTSRSSCSAPDELSSRELENLLKSSKDFKKRRIVENSKLIQEHEPSGLDALASLAVLGENLLGPADSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKEHIHNRVDESDTNGGASRETVNPLENEGLNRGQVEVGESSAGKIDLNCHPNRDDSQVDNIAKLSDHIWEHINMNQNGGPRTVNTEMQEVQHSSLATQSNGEDTRYLSDERCIASTVGNKEKRDEVLNHSNESEKNLS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05230 910 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Mepo3g05230 910 MobiDBLite consensus disorder prediction 290 311 - -
Mepo3g05230 910 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Mepo3g05230 910 MobiDBLite consensus disorder prediction 756 826 - -
Mepo3g05230 910 Gene3D - 317 444 IPR015300 -
Mepo3g05230 910 MobiDBLite consensus disorder prediction 759 786 - -
Mepo3g05230 910 SMART B3_2 339 439 IPR003340 GO:0003677
Mepo3g05230 910 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Mepo3g05230 910 SUPERFAMILY DNA-binding pseudobarrel domain 337 440 IPR015300 -
Mepo3g05230 910 MobiDBLite consensus disorder prediction 889 910 - -
Mepo3g05230 910 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Mepo3g05230 910 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Mepo3g05230 910 MobiDBLite consensus disorder prediction 438 482 - -
Mepo3g05230 910 MobiDBLite consensus disorder prediction 437 482 - -
Mepo3g05230 910 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 7 836 - -
Mepo3g05230 910 Gene3D - 598 652 - -
Mepo3g05230 910 CDD B3_DNA 337 438 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05230 Mepo-Chr3 65480107 65488261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05230 1 835 B3 DNA Binding Superfamily AT2G30470 47.630 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g05230 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05230 K09287 - gmx:100789848 1362.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05230 3 65480107 65488261 Mepo3g05230 3 65480107 65488261 ECH
Mepo3g05230 3 65480107 65488261 Mepo7g01970 7 29913544 29918927 PCT