Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05212 ATGGCCGCTAGAAATTCGAAACTTGAATACATAACTAATGACTCGAAGAGAAAGACAACATTTGGAAAAAGGAAACAAGGCATAATTAAGAAGATTAATGAAATCACTGCCTTATGTGGAATTGGTGTATGTGGTATAATCTATGAGGAAAACAACACTCAAGCAGTGGTTTGTCCATCCGAAGAAGAAGTCCAGATGGTGTTGGACAAGTTCATGAGTTTTCCTGAATTTGAACAAAGAAAATCGATGGTGGATCATGAGGGATTCTTGAGGAAATCCATAGCAAAAGCCCTAGAGAAGTTAAAGAAACAAAAGGACAACTCCAAGAAGAATGAAATGAATGATCTAATTGGCCAATTCATTCATACGGGTGAATTGGATGGAAATGTGGGTAAGAGTGATCTTGAAGATCTGTTGTTGCTTATTGTTGAGAACCTTAAGGAAGTCGAACAAAGAATCGAATGGATTCAAGCCGAAGATGAGGATTGA 489 0.3763 MAARNSKLEYITNDSKRKTTFGKRKQGIIKKINEITALCGIGVCGIIYEENNTQAVVCPSEEEVQMVLDKFMSFPEFEQRKSMVDHEGFLRKSIAKALEKLKKQKDNSKKNEMNDLIGQFIHTGELDGNVGKSDLEDLLLLIVENLKEVEQRIEWIQAEDED 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05212 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g05212 162 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Mepo3g05212 162 Coils Coil 91 114 - -
Mepo3g05212 162 SUPERFAMILY SRF-like 6 94 IPR036879 GO:0003677|GO:0046983
Mepo3g05212 162 Coils Coil 132 152 - -
Mepo3g05212 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g05212 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g05212 162 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mepo3g05212 162 CDD MADS_SRF_like 7 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g05212 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mepo3g05212 162 PANTHER MADS BOX PROTEIN 8 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05212 Mepo-Chr3 65203549 65204242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05212 1 154 Type I MADS-box Gene Family AT5G48670 44.516 2.51e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g05212 SRF-TF 5.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05212 - - tpra:123917277 209.534