Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05211 ATGGCTAGAACAAAGGTCAAACTCGCCTTCATTGTGAATGATGCTGCTAGGAAAACAACGTATAATAAAAGGAAGAAGAGTCTACTGAAGAAAGCTTATGAAATAAGCACACTTTGCGGAGTTCAAGCATGCGCTGTAATTTATGGCCCCTATGAAGTTCAACCTGAGGTTTGGCCATCACCATGTGAAGTCCAAAGGGTGCTCTCAAACTTTAGGGCAAAGCCTGAAGTTATACAAACCAAACAAATGGAAAATCAAGAGACTTTCATGAACCAAAGGGTTTTGAAAGCTAAAGATAAACTGAAGAAATTAAGGACGGACAATAAGGAAAAAGAGATGACAGTGCTCTTTGATCAATGTATTTATGCAGGTAAACTTGTGAAGAACGATATGTCAGTTGTTGATTTGATTTATCTTGGTTGGTTGATAGACCACAAATTGAAGGACCTCAGTAGAAGGTTGGAATCATGGGATGATTGCAATAATGTTCAAATTCAAAGTCAAGACCAACTACAATTGGTTCCACTGCCACCGCCACCATCCACGAATGAGGAAATGACAATGATGAATCATGGCCATGTTGCGTTGCCTATAAATAATACTGACATTATTGAAAGGGAATTCTTTATGAACTTGATGATGAATGGTGATGGGGATGATACCATACCCTTTGGTGAAGTCGATCCTGGAGTTTTACCCAACCTACTTCCTTGA 714 0.3922 MARTKVKLAFIVNDAARKTTYNKRKKSLLKKAYEISTLCGVQACAVIYGPYEVQPEVWPSPCEVQRVLSNFRAKPEVIQTKQMENQETFMNQRVLKAKDKLKKLRTDNKEKEMTVLFDQCIYAGKLVKNDMSVVDLIYLGWLIDHKLKDLSRRLESWDDCNNVQIQSQDQLQLVPLPPPPSTNEEMTMMNHGHVALPINNTDIIEREFFMNLMMNGDGDDTIPFGEVDPGVLPNLLP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05211 237 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Mepo3g05211 237 Coils Coil 94 114 - -
Mepo3g05211 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g05211 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g05211 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mepo3g05211 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g05211 237 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Mepo3g05211 237 PANTHER MADS BOX PROTEIN 3 132 - -
Mepo3g05211 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mepo3g05211 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mepo3g05211 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05211 Mepo-Chr3 65200321 65201034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05211 1 155 Type I MADS-box Gene Family AT5G48670 51.613 4.65e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g05211 SRF-TF 7.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05211 - - mtr:11434260 266.544