Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05209 ATGGCCAGAGGTAAGGTGAAACTAGCATACATAACATGTGACTCGAAGAGGAGGATGACATTCAGAAAGAGGAAAAATGGAATTATGAAGAAGATTAATGAAATTAGCACTCTGTGCGGAATAGAAGCTGGTGCAATAATTTACGAGCAAAACAATCCTCAAGTACAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGATATCCAGGTTCAGGAATTTGCCTGGACTGGAACAAAGTAAAAAGATGGTGGATCAAGAGGTATTCTTGAGGCAAAGCATTGGGAAAGTCTATGAGCAGTTGATGAAACAAAGGAAGGAAACCAGAAAGAAGGAAATGACCAATATCATTCATCATTTCATTCATACCACAGAATTTAATGGATATTTAATGAGCAAACATGATCTTAATGATTTTTCCTCTTTTATTGATGAGAATTTGAGGGAGGTCGATCAAAAGATGAAAGGAATGATAATCGAAGATTGA 486 0.3724 MARGKVKLAYITCDSKRRMTFRKRKNGIMKKINEISTLCGIEAGAIIYEQNNPQVQVWPSDSGVRSVISRFRNLPGLEQSKKMVDQEVFLRQSIGKVYEQLMKQRKETRKKEMTNIIHHFIHTTEFNGYLMSKHDLNDFSSFIDENLREVDQKMKGMIIED 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05209 161 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Mepo3g05209 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 PANTHER MADS BOX PROTEIN 3 154 - -
Mepo3g05209 161 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g05209 161 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mepo3g05209 161 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g05209 161 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05209 Mepo-Chr3 65185418 65186370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05209 1 155 Type I MADS-box Gene Family AT5G48670 49.359 4.44e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g05209 SRF-TF 7e-15 No_clan