Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05206 ATGACTAGGAAGAAGGTGAACCTTGCCTACATCACCAGTGACACAAAGAGGAAGGGAACATTCAAGAAAAGAAAAAATGGTTTGATCAAGAAGATTGATGAAATCAGCACGCTGTGTGGGATCGAAGCGTGTGCTATCATCTTTGATCAAAACGATCCTCAACCAGAGGTCTGGCCTTCGCCATGGGGAGTGCAAAAGGTGCTGTCAAGGTTCCGGAGATTGCCTGAACTAGAACAAAGCAAAAAAATGTTCAATCAAGAGAGCTTCTTGAAGCAAAGGATCCAAAAGGGACAAGAACAGCTGAAGAAACAAAGGAATGACAACAAAAGGAAGGAAATGACTCATCTGATGTTTCAATGCCTTAATGCTGGTCAGATTTTTGACAATGTTGGCATGGATGATCTCAATGATATCTCATGGTTGATTGATCAGAACTTGAAACAGATCGATAGGAAACTCGATCAGTCTCAAGCTGAAGAAGTTGTTCAAAACCAAGCTGGAAATGTGAGTGGAGGGGAGCAGGGAATGGAGAACATTGCTGATCCAATGCAAAGGCAGCATTGGCCAATGGATTTCACCAACAACAACATTGGTGATGTGTTACCATTTGAAAATGGTAACAATGTGCCACATGGTTTCTGGCCTTGA 648 0.4244 MTRKKVNLAYITSDTKRKGTFKKRKNGLIKKIDEISTLCGIEACAIIFDQNDPQPEVWPSPWGVQKVLSRFRRLPELEQSKKMFNQESFLKQRIQKGQEQLKKQRNDNKRKEMTHLMFQCLNAGQIFDNVGMDDLNDISWLIDQNLKQIDRKLDQSQAEEVVQNQAGNVSGGEQGMENIADPMQRQHWPMDFTNNNIGDVLPFENGNNVPHGFWP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05206 215 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo3g05206 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mepo3g05206 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mepo3g05206 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g05206 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g05206 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g05206 215 PANTHER MADS BOX PROTEIN 3 153 - -
Mepo3g05206 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g05206 215 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
Mepo3g05206 215 Coils Coil 87 114 - -
Mepo3g05206 215 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Mepo3g05206 215 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05206 Mepo-Chr3 65162759 65164113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05206 1 173 Type I MADS-box Gene Family AT5G48670 51.429 7.01e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g05206 SRF-TF 7.2e-16 No_clan