Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05202 ATGGCACACCAAGAATTTTCCTTTGCTCTAGTGATTCTAGTTGTTTTGTGTATTAACATGAATATGCAAGGAGCTATAGCTGACTATGGTGGTTGGGAGGGTGGTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACTATGGGTGGAGCATGTGGATATGGAAATTTGTATAGCCAAGGATATGGAACCAACACTGCAGCTTTAAGCACTACTTTGTTCAACAATGGTTTGAGCTGTGGTTCTTGCTATGAAATGAGATGCAATGATGACCCAAGATGGTGCAAACCAGGTTCTATTATTGTCACTGCTACAAATTTTTGTCCACCAAATCCATCTTTGCCTAACAACAATGGTGGTTGGTGTAACCCTCCTTTGCAACATTTTGATATGGCTGAACCTGCCTACCTTCAAATTGCTGAATATAGAGCTGGAATTGTGCCTGTTTCCTTTAGAAGGGTGCCATGTTTCAAAAAGGGAGGAGTAAGGTTCACAATAAATGGCCACTCTTACTTCAACCTAGTTTTGGTCACAAATGTAGGTGGTGCTGGGGATGTTCATTCTATATCCATCAAAGGGTCAAGAACTGGATGGCAACCAATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAACTCTTACCTTAATGGACAATCTCTCTCATTTCAAGTTACAACAAGTGATGGTAGAACTATGACAAGTTTCAATGTAGCACCAGCAAATTGGCAATTTGGTCAAACTTTCCAAGGAGCTCAATTTTAA 765 0.4144 MAHQEFSFALVILVVLCINMNMQGAIADYGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTTLFNNGLSCGSCYEMRCNDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAYLQIAEYRAGIVPVSFRRVPCFKKGGVRFTINGHSYFNLVLVTNVGGAGDVHSISIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTMTSFNVAPANWQFGQTFQGAQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05202 254 SUPERFAMILY Barwin-like endoglucanases 12 180 IPR036908 -
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Mepo3g05202 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Mepo3g05202 254 Pfam Lytic transglycolase 67 152 IPR009009 -
Mepo3g05202 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Mepo3g05202 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Mepo3g05202 254 SMART dpbb_1 67 152 IPR007112 -
Mepo3g05202 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Mepo3g05202 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Mepo3g05202 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Mepo3g05202 254 FunFam Expansin 20 158 - -
Mepo3g05202 254 CDD DPBB_EXPA_N 31 157 - -
Mepo3g05202 254 Gene3D - 17 157 IPR036908 -
Mepo3g05202 254 Gene3D - 162 254 IPR036749 -
Mepo3g05202 254 PANTHER EXPANSIN-A15 10 254 IPR002963 GO:0009664
Mepo3g05202 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Mepo3g05202 254 FunFam Expansin 162 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05202 Mepo-Chr3 65059222 65061915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05202 2 254 Expansin Gene Family AT2G40610 76.772 2.43e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05202 - K20628 gmx:100777044 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05202 3 65059222 65061915 Mepo3g05202 3 65059222 65061915 ECH
Mepo3g05202 3 65059222 65061915 Mepo7g01961 7 29844623 29846072 ECH
Mepo3g05202 3 65059222 65061915 Mepo7g01961 7 29844623 29846072 PCT