Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05167 ATGAAGATATCGTTGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTCATCATTTTCTGGAAACATGAACTCAGAAACAGTCTCAAAATATTACCAGAAGACAGAAGAGATACTTAAGTTGTTGAAGCCGATCATTGATACTTTTGCTAATTCCGAGCCAGCGTCCGATGAAGTGCTCAGTAGGACATTCGAAGAACTTGGTCATGCTGTTGATGAAGTAAAGGAGTATGTTGAGAATTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTTGGACTTCAGGTCTCAAGGTCTTGCAGCAGCTGAAGGCTTCAAAGCAATTTCCCAATGATGAATTGAATTCTGAACATTTGGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGATTTGAAGAAACCTCATCTGTAATTAAGGAAGCTCTTATGGAACAACTAGATGATGCAGGGCCCAGTTCAGAGGTCCTGGAAAAAATTGCTGATAGCCTGGGCCTAAAATCTAACGAGGAGGTTCTGATTGAGGCTGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAGACCGAAAAGACGGCAGAAGCTGAATACATTGATCAAATTATTGCTGTTGTAACTCGTATGCATGAGCGCCTTGTTCTGCTTAAGCAATCTCAGAGTAACAGTCCAGTTCCAGTACCCGCTGACTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCAGTGATCGTTGCCTCAGGGCAAACCTATGAGCGGGCATTTATCAAAAACTGGATTGATCTTGGTCTTACTGTTTGTCCAAAGACACATCAGACTTTGGCGCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTGGTTGATCCTATAAAGTCCACAACCTTAAACCAAGCGTCTATCCTTCATGGGTATATGGAGTCTGGTACAACCAGGGAATCTCCTGTTTTTCCTCATTCCAGGAGCAATCTGCCATCCTCACCGGAGTCGGCTCGCTCTCGTTCTTTTAATTCACCAGGTAATAACATACCTTCTTCTGGTGGTATCCAGCGAGAGGGAACATCACCTTTGCACCCACGTTCAATTTCAGAAGGTTCCTTGAGTGGCATAGTTAATGGGCAGTATATGGATGCTGCTAGAACATCACCCACAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTATCGATTCAATGGGCCAACCATCAATATCACCATCTAGAAGGGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTTTCAAGAAACACAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGATACTTCTGGCGAATTAAATCCAGTATCAGATGCTTCTGGTTCTGCTCCCATGCCATCTATGCAGAGAGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCATCTTCTGCTATTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTTTAGTTGAGGGCTTGAGGAGTACTGATCTCAATATTCAGAGAGAGGCAACTTCAGAAATCCGCCTTCTTGCTAAGCACAATATGGACAATCGAATTGCAATTGCAAATTGTGGATCCATTAACATATTAGTTGACTTACTTCAATCAGCTGATTCAAGGGTCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGACAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATACATGTTCTTGAGCACGGGAGCCCAGAAGCCAAGGAGAATTCAGCGGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAACAAGGTTAACATAGGGAGGTCTGGGGCAATTAGGCCACTTGTAGATTTATTAGGGAATGGAACTCCAAGGGGAAAAAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAACAAGAATCGGATTGTGCAAGCTGGTGCCGTGAAGCACCTTGTGGAGTTGATGGACCCAGCGGCAGGAATGGTTGACAAGGCTGTTGCTGTCTTGGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTGGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAATAGATTCTTAAGCATGGTGCTACAACACGGAGCTGTACCGCCATTAGTAGCTTTATCACAGTCCGGCACACCAAGGGCCAAAGAAAAGGCCCAAGCTCTCCTTAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2520 0.4377 MKISLLKMLVDSISSFLHSSFSGNMNSETVSKYYQKTEEILKLLKPIIDTFANSEPASDEVLSRTFEELGHAVDEVKEYVENWHLLSSKVYFVMQVEPLISRIWTSGLKVLQQLKASKQFPNDELNSEHLEHCVQKLKLLGFEETSSVIKEALMEQLDDAGPSSEVLEKIADSLGLKSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIIAVVTRMHERLVLLKQSQSNSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPIKSTTLNQASILHGYMESGTTRESPVFPHSRSNLPSSPESARSRSFNSPGNNIPSSGGIQREGTSPLHPRSISEGSLSGIVNGQYMDAARTSPTGLDDRSASSDESSIDSMGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANFQETQGDDSNASQLSTSPGYSRDTSGELNPVSDASGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSAIEPRVDLSGIEAQVRSLVEGLRSTDLNIQREATSEIRLLAKHNMDNRIAIANCGSINILVDLLQSADSRVQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05167 839 MobiDBLite consensus disorder prediction 460 516 - -
Mepo3g05167 839 Gene3D - 539 834 IPR011989 -
Mepo3g05167 839 MobiDBLite consensus disorder prediction 333 390 - -
Mepo3g05167 839 Pfam Armadillo/beta-catenin-like repeat 626 665 IPR000225 GO:0005515
Mepo3g05167 839 Pfam Armadillo/beta-catenin-like repeat 587 624 IPR000225 GO:0005515
Mepo3g05167 839 Pfam Armadillo/beta-catenin-like repeat 669 706 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 539 583 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 708 747 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 585 625 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 667 707 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 748 788 IPR000225 GO:0005515
Mepo3g05167 839 SMART arm_5 626 666 IPR000225 GO:0005515
Mepo3g05167 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 719 760 IPR000225 GO:0005515
Mepo3g05167 839 Coils Coil 179 209 - -
Mepo3g05167 839 MobiDBLite consensus disorder prediction 460 501 - -
Mepo3g05167 839 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Mepo3g05167 839 CDD RING-Ubox_PUB 237 289 IPR045210 -
Mepo3g05167 839 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Mepo3g05167 839 SUPERFAMILY RING/U-box 225 313 - -
Mepo3g05167 839 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Mepo3g05167 839 SUPERFAMILY ARM repeat 556 828 IPR016024 -
Mepo3g05167 839 PANTHER U BOX DOMAIN-CONTAINING 31 827 - -
Mepo3g05167 839 MobiDBLite consensus disorder prediction 402 446 - -
Mepo3g05167 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Mepo3g05167 839 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Mepo3g05167 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 678 720 IPR000225 GO:0005515
Mepo3g05167 839 FunFam RING-type E3 ubiquitin transferase 540 834 - -
Mepo3g05167 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05167 Mepo-Chr3 64669464 64675936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05167 196 839 U-box Gene Family AT2G23140 61.043 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05167 - - tpra:123913325 1510.74