Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05044 ATGCAAAATAACTCACCTATTCAACCAATGAACTCACTCAAAGAAATATTCCAAAACATTTTCTCAGATAATAGTAACATCATGCTTGCTGCTATCATTTCTTTACTTCTAGTCATTCTCTTTGTTCTTCTTCTTCATCTTTATGCTAAATGGTTCTTAGCTCAAGCACATGCTCAAGCACAAGCTCGACGCCGCCGTCGCCGGAGAACAACTGTCACTGTCTCTGATGTCCTTGGACCAGCAAGGTTCCATCATTTCCACACCTTCAACATTGAAGACTCACCTCTCTCTAGCTCACACACCAAAGGACTTGATTCTTCCATCATTGCTTCAATTCCTATGTTCATTTATGCTGAGAAGAATGATTGTAAAGATGAACTTGAATGTGTGATTTGTTTGAGTGGTTTTGAAGATGGTGAAATGGGAAGGTGTTTACCAAAATGTGGTCATGGTTTTCATCTTGAGTGTATTGATATGTGGTTGAGTTCACATTCTAATTGTCCTATTTGTAGAGCTTCAATTGTTGTGTTTGAGAATGATTCTTCAAGTGTTGTTGAAAATAATGGTGATGATTCTAGTTTTGTTGAAATTGTGGTTGATGAAAGTTCTAGTTCTGAGATTAGAGAAGGTGAACAAGGGAATGATAATGAAAGAGTGAGTGATTCTGTTTCAGAAACTTCTTCCTCTTTGTTTGGTTGCTCTTTGAAGACAGTTTTCAGCAAAGTTTTTCCATCTTCTAATGTAAATGCTATTGAATCACAATCTTGA 768 0.3685 MQNNSPIQPMNSLKEIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHTFNIEDSPLSSSHTKGLDSSIIASIPMFIYAEKNDCKDELECVICLSGFEDGEMGRCLPKCGHGFHLECIDMWLSSHSNCPICRASIVVFENDSSSVVENNGDDSSFVEIVVDESSSSEIREGEQGNDNERVSDSVSETSSSLFGCSLKTVFSKVFPSSNVNAIESQS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05044 255 CDD RING-H2_EL5-like 128 171 - -
Mepo3g05044 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Mepo3g05044 255 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Mepo3g05044 255 FunFam RING-H2 finger protein ATL1 89 176 - -
Mepo3g05044 255 MobiDBLite consensus disorder prediction 203 223 - -
Mepo3g05044 255 Pfam Ring finger domain 128 171 IPR001841 -
Mepo3g05044 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 190 - -
Mepo3g05044 255 SMART ring_2 129 170 IPR001841 -
Mepo3g05044 255 MobiDBLite consensus disorder prediction 203 218 - -
Mepo3g05044 255 SUPERFAMILY RING/U-box 114 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05044 Mepo-Chr3 63092309 63093076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05044 19 219 Rapid Response to Elicitors AT3G16720 34.466 3.33e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05044 - - lang:109329145 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05044 3 63092309 63093076 Mepo3g05044 3 63092309 63093076 ECH
Mepo3g05044 3 63092309 63093076 Mepo7g01846 7 28185739 28185999 PCT