Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05022 ATGGAGAAGCAGAAACAACATGTAGGTGGACCTCAAACTAAGAAGAAAGATTATTGGAGCGATCGATCCCTACCTGACGTAAAGAATAGGGTATATATTACAGATGAATTTAGGATGTATAAATTCAAAGTGAAGCTTTGCTCATGGGATAATGCTCCTCATGATTGGACAGATTGTCCCTTTGCTCATTCTGGGGAAATTGCAAGGCGCCGTGATCTGAAGAAATATTATTACAGCTGTGTCCATTGTCGTGAATTTCAGAATGGATCATGCAGTAAAGGGGATACATGTCAATATGCACATGGTGTCTTTGAGTCCTGGCTGCATCCTGGTCGATACAGAACAACGCTTTGCGATAATGGAACTAAATGCACAAGAAAAGTTTGCTTCTTTGCTCACAAACCCGAGGAGCTTCGCCTGTTGAAGGCTTCTACCAGTTCTGCTTTGCCTTCACCTACATCAAACTCAAATTCACCAAGTGCTTCTGCAATGGATTCCTTCACGTTGAGCTCACCGTCTTCTTCGATACAATCTTCGTCGACGCCGCCTTGGACTCCATCTGCAACATCATCTCCTGCAGGAGGAACCATGTTGAAGACTCAGATTCACACTACAGTCCCTACACTTCAGATGCCGAGCAACAGATTGAAAACTGCATTGAATGCTAGAGATAGTACTGATATAGACATGAAATTTCACGAAAATCACCATATGCCGAAGCCAATGATAGAAGAGTCAAATAGGCTTGCAGGAATGAATTCTACTAACCATGAAGACACTTTCAAGTCATCGATACAATCTTCGAAAGATATGCTGGTGCATTGGAATGTGAACCAAGAACTGTGTGGCTACCCTTCTGACCTTACCAATTCAAATGTGATTGGATCACCAGAATTCAGGGTTGGTCCATTTATGAATTCAAGATGTGATGCCTTTTCGAAGCGGAGCCAGAGCTTTACCGAGCGCAGCAGCTTGGCAAGCTTTAATTCCAAGCTTCCTTCTGCTACCTCAGTTGCATTAGAGCCTTCTACTGCCTTCTCTGATTGGCACTCCACTGATAGAAAGATAGATTGGTCGTGA 1080 0.4324 MEKQKQHVGGPQTKKKDYWSDRSLPDVKNRVYITDEFRMYKFKVKLCSWDNAPHDWTDCPFAHSGEIARRRDLKKYYYSCVHCREFQNGSCSKGDTCQYAHGVFESWLHPGRYRTTLCDNGTKCTRKVCFFAHKPEELRLLKASTSSALPSPTSNSNSPSASAMDSFTLSSPSSSIQSSSTPPWTPSATSSPAGGTMLKTQIHTTVPTLQMPSNRLKTALNARDSTDIDMKFHENHHMPKPMIEESNRLAGMNSTNHEDTFKSSIQSSKDMLVHWNVNQELCGYPSDLTNSNVIGSPEFRVGPFMNSRCDAFSKRSQSFTERSSLASFNSKLPSATSVALEPSTAFSDWHSTDRKIDWS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05022 359 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Mepo3g05022 359 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Mepo3g05022 359 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Mepo3g05022 359 MobiDBLite consensus disorder prediction 144 196 - -
Mepo3g05022 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 102 IPR000571 GO:0046872
Mepo3g05022 359 Gene3D - 79 140 - -
Mepo3g05022 359 PANTHER UNKEMPT FAMILY MEMBER 22 349 IPR045234 -
Mepo3g05022 359 MobiDBLite consensus disorder prediction 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05022 Mepo-Chr3 62785878 62786957 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05022 13 269 C2H2 Transcription Factor Family AT5G12850 45.683 1.04e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g05022 zf-CCCH 0.00014 CL0537