Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05018 ATGGAGCCTTCTACCTTCTCTGGTTGGGGCTCGCCTGATGGAAAATTAGACTGGTCCATCCGTGGCGATGAACTCAACAAAATGAGGAAATCTCATTGTTTTGGCCTTCGAAACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAGACGTCGATGATCCAGATGTATTTTTAAGGCATGAATCTTGGGTTAATTCTCTTGTGAAGGATGCTCCATCAATGGAATTTGATCAATATTGTGTTGAAGATCAACTGCAATACCATAATCCCGATGCGGTTCTGTCTTTGCTAGAACAATTGTACATGGAGCATGAGCAGATGAAACAAGATTGCCTTAAGAGAGCAGGTTTTGAAATGGAGGAGCAGCAACGAGATGATGAATTTATGATGTATACATTCAAAGTGAGGCATTGCGGTTATGTTCATGATTGGAAAAAATGTGACTTTGCTCATCATGGGGAAAGCATAAAACGCCGTGATCTGAAGAAATATTATTACAGATGTCTCCATTGTCATGCATTTCAGAAATATGGATCATGCAGGAAAGGGGATGCATGTCAATATGCACATGGTGTTTTTGAGTCTGGGCTGCATCCTAGTCGATACAGAACAACGCTTTGCAGAAATGGAACTGAATGCAAAAGAGATATTTGCTTCTTTGCTCATGATTAA 672 0.4062 MEPSTFSGWGSPDGKLDWSIRGDELNKMRKSHCFGLRNRSSTSTMAAALDVDDPDVFLRHESWVNSLVKDAPSMEFDQYCVEDQLQYHNPDAVLSLLEQLYMEHEQMKQDCLKRAGFEMEEQQRDDEFMMYTFKVRHCGYVHDWKKCDFAHHGESIKRRDLKKYYYRCLHCHAFQKYGSCRKGDACQYAHGVFESGLHPSRYRTTLCRNGTECKRDICFFAHD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05018 223 Gene3D - 166 223 - -
Mepo3g05018 223 ProSiteProfiles Zinc finger C3H1-type profile. 170 193 IPR000571 GO:0046872
Mepo3g05018 223 PANTHER UNKEMPT FAMILY MEMBER 120 222 IPR045234 -
Mepo3g05018 223 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 191 IPR000571 GO:0046872
Mepo3g05018 223 SUPERFAMILY CCCH zinc finger 163 194 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05018 Mepo-Chr3 62778017 62780837 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05018 126 222 C2H2 Transcription Factor Family AT5G12850 56.566 2.26e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g05018 zf-CCCH 3.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05018 - - mtr:25490901 162.54