Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05017 ATGCGGAGGGGATTGAAAGCAAATTGGGAGAGTATGGCTCCAAATAAGGTATTGGTTAGCAGCTCATGCAATACAGCTAAAGATGACGTATTGGCATTCACAGATGCTGTTGAAAAAGGCGAACATGAAGTCGATGAGGTAGGATTATGGTATGGAAGGAGGGTTGGATCGAAGGTAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTCTTATATTCTCGGAACCAGTCGTGTTGATGTTAACCGAGTGTGCGGCTCAGATAGGGCTACCGCTCTTCGTTGTGCTGTTTCTGGATGTTCTGCTGCTTCTGCCGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTTGTTCCATTGATGTGAATGATAACTGGTGCAACGACTTGTTTGTCTCGGTCTCTAGTAGTATCTTCGGTTCAAGGAATAGGATACTACAACCCATACTAGAAGGCGTAGATGATGATTTCCTTAAAGAAGTAGGATTTCAATTGGTGGAGCAGCAACACGATGTAGGTACACCTCGAACTGAGAAGAAAGATTATCCGATTGATCCATCCCTACCTGACATAAACAATGAGATATATGGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAATGGCTTACTCTCATGATTGGACCGAGTGTCCATTTGTTCACCCAGGGGAAAACACAAGGCGCCGTGATCCAAGGAAATATCATTACACCTGTCTCCCTTGCCCCGAGTTTCGGAAGGGATCATGTAGCAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCAGCTCAATATAGAACAAGGCTTTGCAAGGATGGAACCAGATGCACCAGAAGGGTTTGCTTTTTTGCTCACAAGCCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTTTGCCTTCACCTACATCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACATTGAGTTCTCCGTTTTCTTCGATACAATCTGCACCAACGCCACCTTTGACTCCATCGGCATCATCGCCTTCTACTGGAACCATGTGGCAAACTCAGATTCAGCTTCATGCTGCAGTCCCAACCCTTCAGATGCCGAGAAACAGATTGAAAACTGCACTAAATGCTGGAAATAACGTTGAATTTCTCGAACTTGAGAATCGCTTCAGTCTTTCATCCCCTTCAAATAGGCTTGCAAGAGTGAATCCTACTAACCTAAAAAACTTTTTCGGGTCATCGATACAATCTCCGACCTCAATGCAGATGAATCAGAATGCAAACCAGCAACTTTTGGGGCTATCATTCTGA 1371 0.4398 MRRGLKANWESMAPNKVLVSSSCNTAKDDVLAFTDAVEKGEHEVDEVGLWYGRRVGSKVMGYEERTPLMVAALFGSKGVLSYILGTSRVDVNRVCGSDRATALRCAVSGCSAASAEVIKLLLDASADVCSIDVNDNWCNDLFVSVSSSIFGSRNRILQPILEGVDDDFLKEVGFQLVEQQHDVGTPRTEKKDYPIDPSLPDINNEIYGTDEFRMFTFKVKPCSMAYSHDWTECPFVHPGENTRRRDPRKYHYTCLPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDGTRCTRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPFSSIQSAPTPPLTPSASSPSTGTMWQTQIQLHAAVPTLQMPRNRLKTALNAGNNVEFLELENRFSLSSPSNRLARVNPTNLKNFFGSSIQSPTSMQMNQNANQQLLGLSF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05017 456 Gene3D - 29 143 IPR036770 -
Mepo3g05017 456 ProSiteProfiles Zinc finger C3H1-type profile. 256 278 IPR000571 GO:0046872
Mepo3g05017 456 MobiDBLite consensus disorder prediction 346 369 - -
Mepo3g05017 456 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 276 IPR000571 GO:0046872
Mepo3g05017 456 SUPERFAMILY Ankyrin repeat 59 137 IPR036770 -
Mepo3g05017 456 SMART c3hfinal6 253 277 IPR000571 GO:0046872
Mepo3g05017 456 SMART c3hfinal6 286 309 IPR000571 GO:0046872
Mepo3g05017 456 SMART ANK_2a 98 130 IPR002110 GO:0005515
Mepo3g05017 456 SMART ANK_2a 63 93 IPR002110 GO:0005515
Mepo3g05017 456 FunFam Zinc finger CCCH domain-containing protein 66 209 277 - -
Mepo3g05017 456 Gene3D - 255 314 - -
Mepo3g05017 456 PANTHER UNKEMPT FAMILY MEMBER 26 416 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05017 Mepo-Chr3 62774944 62777883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05017 44 438 C2H2 Transcription Factor Family AT5G12850 46.325 1.04e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g05017 zf-CCCH 2.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05017 - - mtr:11423139 699.508