Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05004 ATGGAAAAAGAATATTGCCACAAATCTCAAGCATCTGAGGAAGCTAAACATGAAGATTCAAATGAGAACCAACAAGATCAACTCAACATCATTCCTTATGGGGTCGACATTTCAAATGATGTTTGGTCTTGCATCGTTGGGATAGTGGTATATTGGCTCATTGCATCTGTAACTCTGGCTGTTGGTGTCCATGGATCTGTTAATTTACAATTGGGACCTTACTCCTCAAGTTTGATAGAAATCAACTCAGTCTTAATACAATCTATCAAGGTGGAACAAAATAATGAGCCAAAACCTGGTCTAATGCTTTATGGATTTGATTATCCTCCTTCACTAGATGTTAAAATAAATTGGACTGAGATGTATGATGCAAATATACCAGCAAAATCTCAAGAGGAATGGATATTCTACTTGAATAAAGGTTCCCAATTAAATGTTTTTTACAATGTTAAGTCCCTAGTTGCACCCTTATTCCTTGTCGTTGCTAAAGATAGAGAAAGCCTAATCAAGTGGAAAGAGGATCCATTATTCCCTAATGCAACATTGTATTGGAATAATATCTATGGAAGTGGTAGTATCTCACAGAAAATATCACATTCATCTACTTACTATGTGGCTATTGGCAATATGAAACCTCAAAATGTAAAGGTAGAGTTGAAATTCATTGTAAATGCACTTCTCTACAATACAACTGGGTCTTATCAAAAATGTTCTCTGGATAATGGTTTATGTAGATTAAACCCTGCTCTTTCTGCAAACATAGCACTATTAACAACTCCTGGTCCTATAGAGGGTGCTTCAAAAAATGAATGGTTTGATGTGAATGTTTCTTATGAACCAAGATGGATCATATATTTTGCAGGATTAGGTGTGTTCATTGTGCAAATCTTATTCTCCATAAAATTCTACAAAACGTTCCGAACCAACAATGAAGAAAATGCAAGATTCGAACAAGTGGAAGTGACTTCAGAACGAGCTCCACTATTGTCTAGAAAAGATAGTGATCTTTCAAGCTGGTGTTCATCTTATAATTCATTCTCCAGTGAAAATTCTGATGAAGAAAAGCCAATAATTGAAGGGGAAAGTAGTAATCTTCAATGTTTGTGTGTTATTTGCTTTGATGCCTCAAGGGATTGCTTTTTTCTTCCATGTGGCCATTTTGCAACATGCTTTGCGTGTGGAACAAGAATTGCTGAAGAAACTTGCAGTTGTCCCATTTGCAGAAGGAAATTGAAGAAAGTAAGAAAAATTTATATTGTATAA 1263 0.3531 MEKEYCHKSQASEEAKHEDSNENQQDQLNIIPYGVDISNDVWSCIVGIVVYWLIASVTLAVGVHGSVNLQLGPYSSSLIEINSVLIQSIKVEQNNEPKPGLMLYGFDYPPSLDVKINWTEMYDANIPAKSQEEWIFYLNKGSQLNVFYNVKSLVAPLFLVVAKDRESLIKWKEDPLFPNATLYWNNIYGSGSISQKISHSSTYYVAIGNMKPQNVKVELKFIVNALLYNTTGSYQKCSLDNGLCRLNPALSANIALLTTPGPIEGASKNEWFDVNVSYEPRWIIYFAGLGVFIVQILFSIKFYKTFRTNNEENARFEQVEVTSERAPLLSRKDSDLSSWCSSYNSFSSENSDEEKPIIEGESSNLQCLCVICFDASRDCFFLPCGHFATCFACGTRIAEETCSCPICRRKLKKVRKIYIV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05004 420 Coils Coil 411 420 - -
Mepo3g05004 420 SMART ring_2 369 407 IPR001841 -
Mepo3g05004 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 420 IPR013083 -
Mepo3g05004 420 Pfam Domain of unknown function (DUF4793) 193 298 IPR032010 -
Mepo3g05004 420 SUPERFAMILY RING/U-box 368 414 - -
Mepo3g05004 420 ProSiteProfiles Zinc finger RING-type profile. 369 408 IPR001841 -
Mepo3g05004 420 Pfam Domain of unknown function (DUF4792) 100 168 IPR032008 -
Mepo3g05004 420 MobiDBLite consensus disorder prediction 1 23 - -
Mepo3g05004 420 Pfam Zinc finger, C3HC4 type (RING finger) 367 414 - -
Mepo3g05004 420 PANTHER OS05G0521000 PROTEIN 35 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05004 Mepo-Chr3 62620021 62624148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05004 369 417 C3H Transcription Factor Family AT3G06140 34.694 6.66e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05004 - - mtr:25490879 770.385