Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04979 ATGAAACCAATTGGAGTACGTATTGGTGGTGGTGATAATTTAAAGATCACCAACCACTCTTCTATTGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACACAACCACTTCCCTCAAAAGAAACTTCAACAAAATGTTGATGATCATAACATTTGTAGCTTTGGTTATTCGAATGCTTCAACCTATAGTTTTATGTGGCCTAATAATAATATCATGTCTCAAGAAGCTAGCTTTGTTGATCAGCTATTGGCAAATGAAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGCGATCAACGGTTTAGGAAAGGGTGCAAAAGTGGTTGGAAGAAGACCTAAGAAAGTGTCTTCTTTTTCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGCTGAAGTTGGTGAAGCAATATGGTGTAAGAAAATGGTCTGAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAAAGATGGCATAATCATCTCAGGCCTGATATCAAAAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATGCTAGTAGAAACTCATGGCATGATTGGAAACCGTTGGGCGGAGATTGCGAAGAGAATTCCTGGAAGAACTGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGGCCTCAAACCACTGATGGTAAACCACAATCTTCTATTCTTCAAGACTACATCAAAACTTTGTCTACTCAAAAAGCGTCCACCGGTACTACTACTACTGCTGCTGCTACTAGCTCCGTGTCAGCGATCTCTGAGGACCCTTCTTCAAACCAATCTTCCTTTGTTTTTTCTAACCTATCTCATGAAAATTCATCATCACCACTTATATCTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAACGCTGAACCTGTTAACCCCTACTCCAAGAAACCCTCTTCAAACCCTAACTCTTTGGGTTATTCTTCCCAAACTAACAGTAATCAGATTCTCCCTGATGTTACTGATTGTGGATTTGTTCCTTCCAATCCTTCCAATTACCCTAAGCCAAATTCACAAAACAACATGTACTTGAGTACTTCTTCCACACCTATGATGAATTACCTTAATTCTGATCACTACCTTTCTCCAATGTTGAATGGAATTCAAAATCAGAACAATGTGGAGTTGCATCTTGGGAATATGAATTTTTCAGAGGGGAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCAGTTTTATTAA 1335 0.3865 MKPIGVRIGGGDNLKITNHSSIGPPLTAIDRFLWGQHNHFPQKKLQQNVDDHNICSFGYSNASTYSFMWPNNNIMSQEASFVDQLLANEEVMNWTQQIPSLCVEKEDAINGLGKGAKVVGRRPKKVSSFSLIKGQWTDEEDRKLLKLVKQYGVRKWSEIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERMLVETHGMIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTDGKPQSSILQDYIKTLSTQKASTGTTTTAAATSSVSAISEDPSSNQSSFVFSNLSHENSSSPLISESYDDELLFMQQLFKVNNNAEPVNPYSKKPSSNPNSLGYSSQTNSNQILPDVTDCGFVPSNPSNYPKPNSQNNMYLSTSSTPMMNYLNSDHYLSPMLNGIQNQNNVELHLGNMNFSEGKREMDLLELVSSAQFY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04979 444 Gene3D - 132 184 - -
Mepo3g04979 444 CDD SANT 187 230 IPR001005 -
Mepo3g04979 444 MobiDBLite consensus disorder prediction 330 355 - -
Mepo3g04979 444 FunFam Transcriptional activator Myb isoform A 132 185 - -
Mepo3g04979 444 Pfam Myb-like DNA-binding domain 136 196 - -
Mepo3g04979 444 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Mepo3g04979 444 PANTHER MYB PROTEIN-RELATED 133 267 - -
Mepo3g04979 444 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Mepo3g04979 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Mepo3g04979 444 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Mepo3g04979 444 Gene3D - 187 256 - -
Mepo3g04979 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Mepo3g04979 444 CDD SANT 136 179 IPR001005 -
Mepo3g04979 444 SMART sant 184 232 IPR001005 -
Mepo3g04979 444 SMART sant 132 181 IPR001005 -
Mepo3g04979 444 MobiDBLite consensus disorder prediction 227 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04979 Mepo-Chr3 62247521 62250483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04979 23 441 MYB Transcription Factor Family AT5G11050 39.159 1.52e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g04979 Myb_DNA-bind_6 6.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04979 K09422 - gmx:100786295 412.92