Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04975 ATGAAGCTCTCACTCTTTGGTAAAAAAGATTCGTCAAAACAAGTTACCTCCCATACTCATGAGGCAAAGATAACATGTGGTATATGCTTTGATACAAAAACAGATTCTGATATATTCAATATAAGGACCCCCATCTTCAAAAGAAAATTGTGCAAGCACCTCTTTTGTGTTGACTGCATTTGCAAGTATGTAGAAGTTCAAATTAATGATAACGCGTACAAGGTTTTGTGTCCAAGTCCAAATTGTTTTGTGAAATATAAGCCGAAACATTTGAAACACATTTTGCCTAACCAGCTTATTGTTAAATGGAAGTTTTTAGCTTCTGAGTTATCTAAGCCGTCAGAGCCGAAGACTTACTGCCCTTACGCGAATTGTTCTGTTTTGTTGGGCAAAGAAAATGATATTGGAAGAGAATTTAACAGCAGTTCTAGGTGCACTTCGTGTCACAGACAATTTTGTGCAAAGTGCAAAGTTCAATGGCATGCAGGAATGAATTGTAAGACATTCCAACAATTGAAAAGGAATGACAAAAATGATTTGGATAACAAATTTTTGGCGTTGGCTAGAAAACAACAGTGGCAAAGATGTCCAAATTGCTTTATGTATGTCAAGAAAAGTGCAGGATGTAGTTTAATGAAATGCAGTTGTGGATGCAAATTCTGCTACAAATGTGGGAAGAAGCGATCATATACAGCACATACATGCAAATAG 711 0.3629 MKLSLFGKKDSSKQVTSHTHEAKITCGICFDTKTDSDIFNIRTPIFKRKLCKHLFCVDCICKYVEVQINDNAYKVLCPSPNCFVKYKPKHLKHILPNQLIVKWKFLASELSKPSEPKTYCPYANCSVLLGKENDIGREFNSSSRCTSCHRQFCAKCKVQWHAGMNCKTFQQLKRNDKNDLDNKFLALARKQQWQRCPNCFMYVKKSAGCSLMKCSCGCKFCYKCGKKRSYTAHTCK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04975 236 SUPERFAMILY RING/U-box 183 229 - -
Mepo3g04975 236 SMART ibrneu5 101 166 IPR002867 GO:0008270
Mepo3g04975 236 SMART ibrneu5 178 235 IPR002867 GO:0008270
Mepo3g04975 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Mepo3g04975 236 Pfam IBR domain, a half RING-finger domain 187 235 IPR002867 GO:0008270
Mepo3g04975 236 Pfam IBR domain, a half RING-finger domain 110 166 IPR002867 GO:0008270
Mepo3g04975 236 SUPERFAMILY RING/U-box 23 109 - -
Mepo3g04975 236 Gene3D - 163 236 - -
Mepo3g04975 236 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Mepo3g04975 236 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 227 IPR031127 GO:0004842|GO:0016567
Mepo3g04975 236 ProSiteProfiles Zinc finger RING-type profile. 26 78 IPR001841 -
Mepo3g04975 236 ProSiteProfiles TRIAD supradomain profile. 22 236 IPR044066 -
Mepo3g04975 236 SUPERFAMILY RING/U-box 117 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04975 Mepo-Chr3 62209951 62211538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04975 15 233 C3H Transcription Factor Family AT2G31760 26.872 8.08e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04975 K11975 - mtr:25481406 244.973