Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04974 ATGAAGCTCTCACTCTTTGAAAAAAAAGATACTGATGAAGCAAAGAAAACATGTGGTATATGCTTTGATACAAAAACAGATTCTGATATATTCAACATAAGGTTCACCATCTTCAAAATAAGAATGTGTAAGCACCTCTTTTGTGTTGACTGCATTTGCAAGTATGTAGAAGTTCAAATTAATGATAACGCGTACAAGATTTTGTGTCCAAGCCCTAATTGTTATGTGAAATATAAGCCGAAACGTATGAAACACATTTTGCCTACACAACTTATTGTTAAATGGAAGTTTTTGACTTCTGACTTATCTAAGCCGTCAGAGCCAAAGAATTACTGCCCTTACGCGAATTGTTCTGTTTTGTTGGGCAAAGAAAATTATATTGGAAGAGTATTTGACAGCAGTTCTAAGTGCCCTTCGTGTCACAGACAATTTTGTGCAAAGTGCAAAGTTCCATGGCATGGAGGAATGACTTGTGAGACATTCCAACAATTGAAAAGGAATGACAAAAATGATTTGGATAACAAATTTTTGGCGTTGGCTAGGCAACAACAGTGGCCAAGATGTCCAAATTGCTTTATGTATGTCAAGAGAAGTGAAGGATGTGATGGCGTGAGATGCAGGGTCCAAAATGTTCATTCCACCTATTTGTCAATGATTTTCGTAGCTGCTTCGATAAGATGA 681 0.3671 MKLSLFEKKDTDEAKKTCGICFDTKTDSDIFNIRFTIFKIRMCKHLFCVDCICKYVEVQINDNAYKILCPSPNCYVKYKPKRMKHILPTQLIVKWKFLTSDLSKPSEPKNYCPYANCSVLLGKENYIGRVFDSSSKCPSCHRQFCAKCKVPWHGGMTCETFQQLKRNDKNDLDNKFLALARQQQWPRCPNCFMYVKRSEGCDGVRCRVQNVHSTYLSMIFVAASIR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04974 226 CDD BRcat_RBR_unk 111 161 - -
Mepo3g04974 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 107 IPR013083 -
Mepo3g04974 226 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Mepo3g04974 226 ProSiteProfiles TRIAD supradomain profile. 14 226 IPR044066 -
Mepo3g04974 226 SUPERFAMILY RING/U-box 110 163 - -
Mepo3g04974 226 Gene3D - 155 213 - -
Mepo3g04974 226 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 210 IPR031127 GO:0004842|GO:0016567
Mepo3g04974 226 Pfam IBR domain, a half RING-finger domain 106 158 IPR002867 GO:0008270
Mepo3g04974 226 ProSiteProfiles Zinc finger RING-type profile. 18 70 IPR001841 -
Mepo3g04974 226 SUPERFAMILY RING/U-box 15 101 - -
Mepo3g04974 226 SMART ibrneu5 93 158 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04974 Mepo-Chr3 62202339 62203682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04974 10 207 C3H Transcription Factor Family AT2G19610 24.510 7.33e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04974 K11975 - mtr:25481406 216.468