Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04956 ATGAAGTGGGAAATGGAAATTCTTTCACCAAATTCACACCCTCATGCACCATTTGTTCAAAATTCCAACAATACCAACAATTGGTTTTTGGAAGATTGTAGCAATAGCATTAACAGGAGTACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTATGATAAGGATACGCCGGATCGGTGGCATAAGGTAGCTGCAATGATCCCTGGAAAGAGTGTTGTTGATGTTATGAATCAGTATAAGGAATTGGAAGCTGATGTTTGTAATATAGAAGCTGGTTTGGTTCCAATTCCTGGTTATAGTACTACTGCTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGTTTTAGAGGAATTAGTGGAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGGAACTTTGTGATCACTAGGACACCAACACAAGTAGCTAGCCATGCTCAGAAATATTTCATCAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAGTTTCTAGAACTTCTCCAACTTCAGAAGAAACCAAGAGATCCACTTCACCACATATGAACATGAGCAAGTATTCCACTGCTAACACCACTTCTGAGATGCATTTTCAGCCAGCTACTATGACAGCATTCAATCCATCACATGAACAAGTTTTCATGTCTCCTTATGGAGTTAATAATAACTCTTATGGATTTAAAATGCAAGGTCAAAATATGCATAGAAATCCTCTTCACGAGTCTTCTTATTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 966 0.382 MKWEMEILSPNSHPHAPFVQNSNNTNNWFLEDCSNSINRSTKWTPAENKLFENALAVYDKDTPDRWHKVAAMIPGKSVVDVMNQYKELEADVCNIEAGLVPIPGYSTTASPFTLDWVNSSGYDGFRGISGKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEVSRTSPTSEETKRSTSPHMNMSKYSTANTTSEMHFQPATMTAFNPSHEQVFMSPYGVNNNSYGFKMQGQNMHRNPLHESSYFGPQTQNMVFQMQSSQQHYSHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04956 321 CDD SANT 42 88 IPR001005 -
Mepo3g04956 321 Gene3D - 147 197 - -
Mepo3g04956 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 38 295 IPR043363 -
Mepo3g04956 321 MobiDBLite consensus disorder prediction 219 241 - -
Mepo3g04956 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 197 IPR017930 -
Mepo3g04956 321 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Mepo3g04956 321 Pfam Myb-like DNA-binding domain 42 87 IPR001005 -
Mepo3g04956 321 Pfam Myb-like DNA-binding domain 148 193 IPR001005 -
Mepo3g04956 321 ProSiteProfiles SANT domain profile. 149 197 IPR017884 -
Mepo3g04956 321 Gene3D - 34 102 - -
Mepo3g04956 321 MobiDBLite consensus disorder prediction 128 147 - -
Mepo3g04956 321 ProSiteProfiles Myb-like domain profile. 141 193 IPR001005 -
Mepo3g04956 321 FunFam transcription factor MYB1R1 147 198 - -
Mepo3g04956 321 NCBIfam myb-like DNA-binding domain, SHAQKYF class 144 196 IPR006447 GO:0003677
Mepo3g04956 321 CDD SANT 148 193 IPR001005 -
Mepo3g04956 321 SMART sant 39 91 IPR001005 -
Mepo3g04956 321 SMART sant 145 195 IPR001005 -
Mepo3g04956 321 SUPERFAMILY Homeodomain-like 143 196 IPR009057 -
Mepo3g04956 321 FunFam Transcription factor SRM1 35 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04956 Mepo-Chr3 61969508 61971607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g04956 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04956 - - cam:101514273 527.324