Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04943 ATGAAATTAGTAACCCTAATAAAACACAGCAAAAAAAACCTAAGGCAGTTCCACCAAAAAAGAAAAAATCCTAACACAGTTGCCAATAAGAGAGAATCTGTTGCAGAAGACTGTGCTGATGAAAAGAAGAAGCCAATAAAAGCAACCATTAGTCGTCTACTTCAACTTCTTTCAGCAAAAGGATCTCAAAACAAAATGAAGACAAAATCCCTTTCAGAAGACCACGACGACTATGATAGAAGGAGAATAAGCAAGCAACCACTAGGACCAACAAACAGATACAGATCAAGCCAAAAAAAACAAAGACAGATATTGGACAAGGCCAATCCTCAAAAATCTTCTGTGTATGCGAAGATTCAAATAAAAGAAAAAGTGGTGAAAGTGAAATGTCCAGATCCAGAATGTTCTGTTGAACTGAAACCAGAACATTTGCAATCCATTTTACCTAACGAAATCATTGTTGATTGGGAATCTGCAAACTGTGAGGCTTCCATTGCTTTGAAGGATAAATTTTACTGCCCTTATAAGAATTGTTCTCTTTTATTGGTGAATGACGGGGCAGGTGCTATTACAAAATGTGAATGCCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCATGGCACGCAGACATGAATTGTCAGGAATTTGAGAAGTCGGAAATAGGTCAAGGCTTAAACCAATCCGATAGGAAGTTTTTGGAGTTGGCTAAAAGAGAAAAGTGGAAGAAATGTCCAAAATGCTCTATGCATGTACAGAGAACTACTGGATGTGAACACATGAGATGCAGGTTGTATTGTGTGGCTGTCACTTCTGCTACATTTGTGGTAGGGATTGGAATAGGTTTCATACTTGCAATCATCGGGCAAGGTACTATACGAAATTATTTGCATATGGAATTAGAAATAAGACATATAAGAAGGCATTGCATATCCAAGTATGCTAAGGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAAGTGTCCGGATCCAGAATGTTCTGTTGAATTGAAACCAGAACATTTGCAATCCATTTTACCTAAAAAAGTCGTTGTTGATAGGGAATCTGCAATTTACGAGTCTTCTATTGTTTTGAGGCAAAAAATATACTGCCCTTATAAAAATTGTTCTCTTTTGTTGGTGAATGACGGGCTAGAGGGTGTTACAAGTTGTGAATGTCCGTCTTGTCATAGGCTATTCTGTGCACAATGTGAAGTTCCATGGCATGCAGATATGAAATGCCGTGAATTTCAGAAGTCGAAAAAGGTTCTAGGTGTGGATGTTACTTCTGCTACACCTGTGGGCAAAGAGCATGTTACAGGCGCAAAGACAAATGAGAACATTCGGTTTTTAGGATGCTTATGTGGCAAACATGCTGGAAGTTCTATATGTTGGTGA 1404 0.3811 MKLVTLIKHSKKNLRQFHQKRKNPNTVANKRESVAEDCADEKKKPIKATISRLLQLLSAKGSQNKMKTKSLSEDHDDYDRRRISKQPLGPTNRYRSSQKKQRQILDKANPQKSSVYAKIQIKEKVVKVKCPDPECSVELKPEHLQSILPNEIIVDWESANCEASIALKDKFYCPYKNCSLLLVNDGAGAITKCECPSCHRLFCAQCKVPWHADMNCQEFEKSEIGQGLNQSDRKFLELAKREKWKKCPKCSMHVQRTTGCEHMRCRLYCVAVTSATFVVGIGIGFILAIIGQGTIRNYLHMELEIRHIRRHCISKYAKVQRKEKVVKVKCPDPECSVELKPEHLQSILPKKVVVDRESAIYESSIVLRQKIYCPYKNCSLLLVNDGLEGVTSCECPSCHRLFCAQCEVPWHADMKCREFQKSKKVLGVDVTSATPVGKEHVTGAKTNENIRFLGCLCGKHAGSSICW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04943 467 Gene3D - 214 271 - -
Mepo3g04943 467 ProSiteProfiles TRIAD supradomain profile. 81 298 IPR044066 -
Mepo3g04943 467 MobiDBLite consensus disorder prediction 61 107 - -
Mepo3g04943 467 SUPERFAMILY RING/U-box 368 422 - -
Mepo3g04943 467 SUPERFAMILY RING/U-box 232 267 - -
Mepo3g04943 467 Pfam IBR domain, a half RING-finger domain 368 416 IPR002867 GO:0008270
Mepo3g04943 467 Pfam IBR domain, a half RING-finger domain 168 216 IPR002867 GO:0008270
Mepo3g04943 467 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 310 430 IPR031127 GO:0004842|GO:0016567
Mepo3g04943 467 MobiDBLite consensus disorder prediction 67 86 - -
Mepo3g04943 467 SUPERFAMILY RING/U-box 167 221 - -
Mepo3g04943 467 SMART ibrneu5 355 416 IPR002867 GO:0008270
Mepo3g04943 467 SMART ibrneu5 154 216 IPR002867 GO:0008270
Mepo3g04943 467 CDD BRcat_RBR_unk 168 219 - -
Mepo3g04943 467 CDD BRcat_RBR_unk 369 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04943 Mepo-Chr3 61799820 61804488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04943 308 431 C3H Transcription Factor Family AT2G19610 26.471 2.00e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04943 K11975 - mtr:25490783 339.732