Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04942 ATGCGTCCGCACAAATTAAAACCTAACGCAGTTCCCCCGAAAAAAGGAAAAAACCTAACACAGTTAACAATAAGAGAGAATCTGTTGCTGAAGACTGTGCTGATGAAAAAGAAGATGGCGATGAAAGCAACCATTAGGACCAACAAAATGAAGACAAAATCTCAAAACAAAATGAAGACAAAATCTCTTTCAGAAGAGCGCGACGAGGCAAAGAAGGAGCATAAGCAAGCAACCACTAGGACCAACAAACAGATACAGATCAAGCCAGAAGAAAACAAAACAAAGACAGTTATCGAACAAGGTCAATCCTCAAAAAGCTTATGCGGTATATGTCTTGATTCTGTAATTGACTCTAAAATATTCACAACTGGTTCATGCAATCACCCCTTTTGTACTAAGTGCATATCCAAGTATGTGAAGGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAAGTGTCCGGATCCAGAATGTTCTGTTGAATTGAAACCAGAACATTTGCAATCTATTTTACCTAAAAAATTCATTGTTGATTGGGAATCTGCAAACTGTGAGGCTTCCATTGCTTTGAAGGAAAAATTTTTCTGCCCTTATAAGAATTGTTCTCTTTTATTGGTGAATGACGAAGCAGGTGCTGTTACAAGTTGTGAATGCCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCATGGCACGCAAATATGAATTGTCAAGAGTTTCAGAAGTCGAAAATAGGTCAAGGCTTAAAACAATCCGATAGGAAGTTTTTGGAGTTGGCTAAAAGAGAAGAGTGGAAGAGATGTCCAAAATGCTCTATGCATGTACAGAGAACTACTGGATGTGAACACATGAGATGCAGGTTGTATTGTATAATTATATCTTACCTTCTCTAG 897 0.3768 MRPHKLKPNAVPPKKGKNLTQLTIRENLLLKTVLMKKKMAMKATIRTNKMKTKSQNKMKTKSLSEERDEAKKEHKQATTRTNKQIQIKPEENKTKTVIEQGQSSKSLCGICLDSVIDSKIFTTGSCNHPFCTKCISKYVKVQRKEKVVKVKCPDPECSVELKPEHLQSILPKKFIVDWESANCEASIALKEKFFCPYKNCSLLLVNDEAGAVTSCECPSCHRLFCAQCKVPWHANMNCQEFQKSKIGQGLKQSDRKFLELAKREEWKRCPKCSMHVQRTTGCEHMRCRLYCIIISYLL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04942 298 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Mepo3g04942 298 Pfam IBR domain, a half RING-finger domain 190 238 IPR002867 GO:0008270
Mepo3g04942 298 SUPERFAMILY RING/U-box 104 183 - -
Mepo3g04942 298 SUPERFAMILY RING/U-box 190 244 - -
Mepo3g04942 298 CDD BRcat_RBR_unk 190 241 - -
Mepo3g04942 298 FunFam RBR-type E3 ubiquitin transferase 103 189 - -
Mepo3g04942 298 ProSiteProfiles TRIAD supradomain profile. 104 298 IPR044066 -
Mepo3g04942 298 MobiDBLite consensus disorder prediction 58 79 - -
Mepo3g04942 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 291 IPR031127 GO:0004842|GO:0016567
Mepo3g04942 298 Coils Coil 60 80 - -
Mepo3g04942 298 Gene3D - 236 292 - -
Mepo3g04942 298 MobiDBLite consensus disorder prediction 48 82 - -
Mepo3g04942 298 Pfam Zinc finger, C3HC4 type (RING finger) 108 153 IPR018957 GO:0046872
Mepo3g04942 298 SMART ibrneu5 176 238 IPR002867 GO:0008270
Mepo3g04942 298 SUPERFAMILY RING/U-box 253 287 - -
Mepo3g04942 298 ProSiteProfiles Zinc finger RING-type profile. 108 153 IPR001841 -
Mepo3g04942 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04942 Mepo-Chr3 61791288 61792184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04942 100 288 C3H Transcription Factor Family AT2G19610 28.141 2.22e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04942 K11975 - mtr:25490783 381.333